GapMind for catabolism of small carbon sources

 

Protein WP_011157877.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011157877.1

Length: 483 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 44 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-arginine catabolism davD hi Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- (characterized) 63% 99% 618.2 3-sulfolactaldehyde dehydrogenase; SLA dehydrogenase; EC 1.2.1.97 61% 604.0
L-citrulline catabolism davD hi Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- (characterized) 63% 99% 618.2 3-sulfolactaldehyde dehydrogenase; SLA dehydrogenase; EC 1.2.1.97 61% 604.0
L-lysine catabolism davD hi Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- (characterized) 63% 99% 618.2 3-sulfolactaldehyde dehydrogenase; SLA dehydrogenase; EC 1.2.1.97 61% 604.0
L-proline catabolism davD hi Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- (characterized) 63% 99% 618.2 3-sulfolactaldehyde dehydrogenase; SLA dehydrogenase; EC 1.2.1.97 61% 604.0
L-arginine catabolism gabD hi succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) (characterized) 62% 99% 614.8 3-sulfolactaldehyde dehydrogenase; SLA dehydrogenase; EC 1.2.1.97 61% 604.0
L-citrulline catabolism gabD hi succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) (characterized) 62% 99% 614.8 3-sulfolactaldehyde dehydrogenase; SLA dehydrogenase; EC 1.2.1.97 61% 604.0
putrescine catabolism gabD hi succinate-semialdehyde dehydrogenase (NADP+) (EC 1.2.1.79) (characterized) 62% 99% 614.8 3-sulfolactaldehyde dehydrogenase; SLA dehydrogenase; EC 1.2.1.97 61% 604.0
4-hydroxybenzoate catabolism adh med aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) (characterized) 56% 93% 528.9 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
2'-deoxyinosine catabolism adh med aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) (characterized) 56% 93% 528.9 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
2-deoxy-D-ribose catabolism adh med aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) (characterized) 56% 93% 528.9 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
ethanol catabolism adh med aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) (characterized) 56% 93% 528.9 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-threonine catabolism adh med aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) (characterized) 56% 93% 528.9 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
thymidine catabolism adh med aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) (characterized) 56% 93% 528.9 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-tryptophan catabolism adh med aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) (characterized) 56% 93% 528.9 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
4-hydroxybenzoate catabolism praB med 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) (characterized) 42% 98% 339.7 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-tryptophan catabolism praB med 2-hydroxymuconate-6-semialdehyde dehydrogenase (EC 1.2.1.85) (characterized) 42% 98% 339.7 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-arginine catabolism patD med aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 41% 99% 333.6 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-citrulline catabolism patD med aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 41% 99% 333.6 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-lysine catabolism patD med aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 41% 99% 333.6 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
putrescine catabolism patD med aminobutyraldehyde dehydrogenase (EC 1.2.1.19) (characterized) 41% 99% 333.6 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-arabinose catabolism xacF lo Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 (characterized) 39% 98% 336.7 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
D-galacturonate catabolism dopDH lo Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 (characterized) 39% 98% 336.7 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
D-glucuronate catabolism dopDH lo Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 (characterized) 39% 98% 336.7 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
D-xylose catabolism dopDH lo Alpha-ketoglutaric semialdehyde dehydrogenase 1; alphaKGSA dehydrogenase 1; 2,5-dioxovalerate dehydrogenase 1; 2-oxoglutarate semialdehyde dehydrogenase 1; KGSADH-I; Succinate-semialdehyde dehydrogenase [NAD(+)]; SSDH; EC 1.2.1.26; EC 1.2.1.24 (characterized) 39% 98% 336.7 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-arabinose catabolism aldA lo lactaldehyde dehydrogenase (EC 1.2.1.22); D-glyceraldehyde dehydrogenase (NADP+) (EC 1.2.1.89) (characterized) 39% 96% 320.1 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-fucose catabolism aldA lo lactaldehyde dehydrogenase (EC 1.2.1.22); D-glyceraldehyde dehydrogenase (NADP+) (EC 1.2.1.89) (characterized) 39% 96% 320.1 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-rhamnose catabolism aldA lo lactaldehyde dehydrogenase (EC 1.2.1.22); D-glyceraldehyde dehydrogenase (NADP+) (EC 1.2.1.89) (characterized) 39% 96% 320.1 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-threonine catabolism aldA lo lactaldehyde dehydrogenase (EC 1.2.1.22); D-glyceraldehyde dehydrogenase (NADP+) (EC 1.2.1.89) (characterized) 39% 96% 320.1 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
D-xylose catabolism aldA lo lactaldehyde dehydrogenase (EC 1.2.1.22); D-glyceraldehyde dehydrogenase (NADP+) (EC 1.2.1.89) (characterized) 39% 96% 320.1 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-phenylalanine catabolism pad-dh lo Phenylacetaldehyde dehydrogenase; PAD; EC 1.2.1.39 (characterized) 38% 98% 318.2 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-arginine catabolism kauB lo 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 38% 95% 301.2 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-arginine catabolism puuC lo 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 38% 95% 301.2 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-citrulline catabolism puuC lo 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 38% 95% 301.2 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
putrescine catabolism puuC lo 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (characterized) 38% 95% 301.2 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-tryptophan catabolism nbaE lo aminomuconate-semialdehyde dehydrogenase (EC 1.2.1.32) (characterized) 38% 100% 301.2 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-isoleucine catabolism iolA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 32% 96% 243 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
myo-inositol catabolism mmsA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 32% 96% 243 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
propionate catabolism iolA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 32% 96% 243 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-threonine catabolism iolA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 32% 96% 243 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-valine catabolism iolA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 32% 96% 243 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-valine catabolism mmsA lo methylmalonate-semialdehyde dehydrogenase (CoA-acylating) (EC 1.2.1.27) (characterized) 32% 96% 243 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-lysine catabolism amaB lo Putative aldehyde dehydrogenase transmembrane protein; EC 1.2.1.3 (characterized, see rationale) 32% 89% 233.4 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-arginine catabolism astD lo N-succinylglutamate 5-semialdehyde dehydrogenase; EC 1.2.1.71; Succinylglutamic semialdehyde dehydrogenase; SGSD (uncharacterized) 34% 94% 225.3 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2
L-citrulline catabolism astD lo N-succinylglutamate 5-semialdehyde dehydrogenase; EC 1.2.1.71; Succinylglutamic semialdehyde dehydrogenase; SGSD (uncharacterized) 34% 94% 225.3 Glutarate-semialdehyde dehydrogenase; EC 1.2.1.- 63% 618.2

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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