GapMind for catabolism of small carbon sources

 

Protein WP_011157894.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011157894.1

Length: 559 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 4 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-arabinose catabolism xacD lo L-arabonate dehydratase (EC 4.2.1.25) (characterized) 34% 96% 288.1 dihydroxy-acid dehydratase subunit (EC 4.2.1.9) 40% 376.7
D-galactose catabolism dgoD lo L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 (characterized) 34% 96% 284.3 dihydroxy-acid dehydratase subunit (EC 4.2.1.9) 40% 376.7
lactose catabolism dgoD lo L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 (characterized) 34% 96% 284.3 dihydroxy-acid dehydratase subunit (EC 4.2.1.9) 40% 376.7
D-xylose catabolism xad lo Xylonate dehydratase (EC 4.2.1.82) (characterized) 33% 92% 282 dihydroxy-acid dehydratase subunit (EC 4.2.1.9) 40% 376.7

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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