GapMind for catabolism of small carbon sources

 

Protein WP_011158415.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011158415.1

Length: 469 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 4 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism bkdB med 2-keto-isovalerate dehydrogenase component β subunit (EC 1.2.4.4) (characterized) 47% 98% 283.1 Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; PDHE1-B; Protein MACCI-BOU; EC 1.2.4.1 65% 433.0
L-leucine catabolism bkdB med 2-keto-isovalerate dehydrogenase component β subunit (EC 1.2.4.4) (characterized) 47% 98% 283.1 Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; PDHE1-B; Protein MACCI-BOU; EC 1.2.4.1 65% 433.0
L-valine catabolism bkdB med 2-keto-isovalerate dehydrogenase component β subunit (EC 1.2.4.4) (characterized) 47% 98% 283.1 Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; PDHE1-B; Protein MACCI-BOU; EC 1.2.4.1 65% 433.0
L-phenylalanine catabolism PPDCbeta med Putative branched-chain alpha keto acid dehydrogenase E1 subunit beta (characterized, see rationale) 40% 98% 228.8 Pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial; PDHE1-B; Protein MACCI-BOU; EC 1.2.4.1 65% 433.0

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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