GapMind for catabolism of small carbon sources

 

Protein WP_011159260.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011159260.1

Length: 339 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 8 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism livM med ABC transporter ATP-binding protein (characterized, see rationale) 30% 96% 144.8 Putative branched-chain amino acid transport system ATP-binding protein, component of The phenylpropeneoid uptake porter, CouPSTW 33% 142.1
L-leucine catabolism livM med ABC transporter ATP-binding protein (characterized, see rationale) 30% 96% 144.8 Putative branched-chain amino acid transport system ATP-binding protein, component of The phenylpropeneoid uptake porter, CouPSTW 33% 142.1
L-phenylalanine catabolism livM med ABC transporter ATP-binding protein (characterized, see rationale) 30% 96% 144.8 Putative branched-chain amino acid transport system ATP-binding protein, component of The phenylpropeneoid uptake porter, CouPSTW 33% 142.1
L-proline catabolism HSERO_RS00890 med ABC transporter ATP-binding protein (characterized, see rationale) 30% 96% 144.8 High-affinity branched-chain amino acid transport system permease protein LivM; LIV-I protein M 34% 143.7
L-serine catabolism Ac3H11_1694 med ABC transporter ATP-binding protein (characterized, see rationale) 30% 96% 144.8 High-affinity branched-chain amino acid transport system permease protein LivM; LIV-I protein M 34% 143.7
L-tyrosine catabolism Ac3H11_1694 med ABC transporter ATP-binding protein (characterized, see rationale) 30% 96% 144.8 High-affinity branched-chain amino acid transport system permease protein LivM; LIV-I protein M 34% 143.7
D-alanine catabolism AZOBR_RS08240 lo Leucine/isoleucine/valine ABC transporter,permease component (characterized, see rationale) 32% 62% 145.2 High-affinity branched-chain amino acid transport system permease protein LivM; LIV-I protein M 34% 143.7
L-proline catabolism AZOBR_RS08240 lo Leucine/isoleucine/valine ABC transporter,permease component (characterized, see rationale) 32% 62% 145.2 High-affinity branched-chain amino acid transport system permease protein LivM; LIV-I protein M 34% 143.7

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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