GapMind for catabolism of small carbon sources

 

Protein WP_011159345.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011159345.1

Length: 443 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 15 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-arginine catabolism braE hi Transmembrane component of a broad range amino acid ABC transporter (characterized, see rationale) 53% 100% 453.4 High-affinity branched-chain amino acid transport system permease protein BraE, component of Branched chain amino acid uptake transporter. Transports alanine 50% 382.9
L-glutamate catabolism braE hi Transmembrane component of a broad range amino acid ABC transporter (characterized, see rationale) 53% 100% 453.4 High-affinity branched-chain amino acid transport system permease protein BraE, component of Branched chain amino acid uptake transporter. Transports alanine 50% 382.9
L-histidine catabolism braE hi Transmembrane component of a broad range amino acid ABC transporter (characterized, see rationale) 53% 100% 453.4 High-affinity branched-chain amino acid transport system permease protein BraE, component of Branched chain amino acid uptake transporter. Transports alanine 50% 382.9
L-isoleucine catabolism livM hi Transmembrane component of a broad range amino acid ABC transporter (characterized, see rationale) 53% 100% 453.4 BraE aka Bra2E, component of General L- (and D-)amino acid uptake porter (transports acidic, basic, polar, semipolar and hydrophobic amino acids). The amino and carboxyl groups do not need to be α since γ-aminobutyric acid (GABA) is a substrate. The system may function with additional binding proteins since L-alanine uptake is not dependent on BraC 33% 162.9
L-leucine catabolism livM hi Transmembrane component of a broad range amino acid ABC transporter (characterized, see rationale) 53% 100% 453.4 BraE aka Bra2E, component of General L- (and D-)amino acid uptake porter (transports acidic, basic, polar, semipolar and hydrophobic amino acids). The amino and carboxyl groups do not need to be α since γ-aminobutyric acid (GABA) is a substrate. The system may function with additional binding proteins since L-alanine uptake is not dependent on BraC 33% 162.9
L-valine catabolism livM hi Transmembrane component of a broad range amino acid ABC transporter (characterized, see rationale) 53% 100% 453.4 BraE aka Bra2E, component of General L- (and D-)amino acid uptake porter (transports acidic, basic, polar, semipolar and hydrophobic amino acids). The amino and carboxyl groups do not need to be α since γ-aminobutyric acid (GABA) is a substrate. The system may function with additional binding proteins since L-alanine uptake is not dependent on BraC 33% 162.9
L-alanine catabolism braE hi High-affinity branched-chain amino acid transport system permease protein BraE, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 50% 99% 382.9 High-affinity branched-chain amino acid transport system permease protein LivM; LIV-I protein M 47% 357.5
L-phenylalanine catabolism livM hi High-affinity branched-chain amino acid ABC transporter permease LivM (characterized, see rationale) 51% 99% 382.9 BraE aka Bra2E, component of General L- (and D-)amino acid uptake porter (transports acidic, basic, polar, semipolar and hydrophobic amino acids). The amino and carboxyl groups do not need to be α since γ-aminobutyric acid (GABA) is a substrate. The system may function with additional binding proteins since L-alanine uptake is not dependent on BraC 33% 162.9
L-serine catabolism braE hi High-affinity branched-chain amino acid transport system permease protein BraE, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 50% 99% 382.9 High-affinity branched-chain amino acid transport system permease protein LivM; LIV-I protein M 47% 357.5
L-threonine catabolism braE hi High-affinity branched-chain amino acid transport system permease protein BraE, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 50% 99% 382.9 High-affinity branched-chain amino acid transport system permease protein LivM; LIV-I protein M 47% 357.5
L-proline catabolism HSERO_RS00890 med ABC transporter ATP-binding protein (characterized, see rationale) 45% 95% 251.9 High-affinity branched-chain amino acid transport system permease protein BraE, component of Branched chain amino acid uptake transporter. Transports alanine 50% 382.9
L-serine catabolism Ac3H11_1694 med ABC transporter ATP-binding protein (characterized, see rationale) 45% 95% 251.9 High-affinity branched-chain amino acid transport system permease protein BraE, component of Branched chain amino acid uptake transporter. Transports alanine 50% 382.9
L-tyrosine catabolism Ac3H11_1694 med ABC transporter ATP-binding protein (characterized, see rationale) 45% 95% 251.9 High-affinity branched-chain amino acid transport system permease protein BraE, component of Branched chain amino acid uptake transporter. Transports alanine 50% 382.9
D-alanine catabolism AZOBR_RS08240 lo Leucine/isoleucine/valine ABC transporter,permease component (characterized, see rationale) 67% 65% 446.8 High-affinity branched-chain amino acid transport system permease protein BraE, component of Branched chain amino acid uptake transporter. Transports alanine 50% 382.9
L-proline catabolism AZOBR_RS08240 lo Leucine/isoleucine/valine ABC transporter,permease component (characterized, see rationale) 67% 65% 446.8 High-affinity branched-chain amino acid transport system permease protein BraE, component of Branched chain amino acid uptake transporter. Transports alanine 50% 382.9

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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