GapMind for catabolism of small carbon sources

 

Protein WP_011159347.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011159347.1

Length: 246 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 20 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
D-alanine catabolism AZOBR_RS08250 hi Leucine//isoleucine/valine ABC transporter,ATPase component; EC 3.6.3.- (characterized, see rationale) 69% 100% 330.1 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine 57% 253.8
L-proline catabolism AZOBR_RS08250 hi Leucine//isoleucine/valine ABC transporter,ATPase component; EC 3.6.3.- (characterized, see rationale) 69% 100% 330.1 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine 57% 253.8
L-arginine catabolism braG hi ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 67% 96% 318.2 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine 57% 253.8
L-glutamate catabolism braG hi ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 67% 96% 318.2 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine 57% 253.8
L-histidine catabolism braG hi ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 67% 96% 318.2 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine 57% 253.8
L-isoleucine catabolism livF hi ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 67% 96% 318.2 NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) 45% 210.7
L-leucine catabolism livF hi ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 67% 96% 318.2 NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) 45% 210.7
L-valine catabolism livF hi ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 67% 96% 318.2 NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) 45% 210.7
L-phenylalanine catabolism livF hi High-affinity branched-chain amino acid transport ATP-binding protein (characterized, see rationale) 59% 100% 259.2 ABC transporter ATP-binding protein-branched chain amino acid transport, component of The branched chain hydrophobic amino acid transporter, LivJFGHM 53% 237.7
L-alanine catabolism braG med High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 57% 100% 253.8 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF 60% 250.8
L-serine catabolism braG med High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 57% 100% 253.8 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF 60% 250.8
L-threonine catabolism braG med High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 57% 100% 253.8 high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF 60% 250.8
L-proline catabolism HSERO_RS00900 med ABC-type branched-chain amino acid transport system, ATPase component protein (characterized, see rationale) 50% 100% 225.7 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine 57% 253.8
L-serine catabolism Ac3H11_1692 med ABC transporter ATP-binding protein (characterized, see rationale) 49% 98% 224.6 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine 57% 253.8
L-tyrosine catabolism Ac3H11_1692 med ABC transporter ATP-binding protein (characterized, see rationale) 49% 98% 224.6 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine 57% 253.8
L-isoleucine catabolism natE med NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 45% 96% 210.7 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine 57% 253.8
L-leucine catabolism natE med NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 45% 96% 210.7 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine 57% 253.8
L-proline catabolism natE med NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 45% 96% 210.7 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine 57% 253.8
L-valine catabolism natE med NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 45% 96% 210.7 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine 57% 253.8
L-histidine catabolism natE med NatE aka LivF aka SLR1881, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 46% 97% 194.5 High-affinity branched-chain amino acid transport ATP-binding protein BraG, component of Branched chain amino acid uptake transporter. Transports alanine 57% 253.8

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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