GapMind for catabolism of small carbon sources

 

Protein WP_011159459.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011159459.1

Length: 325 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 4 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism bkdA lo 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) (characterized) 31% 87% 147.1 TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit; EC 1.1.1.- 36% 210.7
L-leucine catabolism bkdA lo 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) (characterized) 31% 87% 147.1 TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit; EC 1.1.1.- 36% 210.7
L-valine catabolism bkdA lo 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) (characterized) 31% 87% 147.1 TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit; EC 1.1.1.- 36% 210.7
L-phenylalanine catabolism PPDCalpha lo phenylpyruvate decarboxylase (EC 4.1.1.43) (characterized) 33% 54% 111.3 TPP-dependent acetoin dehydrogenase complex, E1 component, alpha subunit; EC 1.1.1.- 36% 210.7

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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