GapMind for catabolism of small carbon sources

 

Protein WP_011159555.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011159555.1

Length: 290 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 20 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-proline catabolism HSERO_RS00885 med ABC-type branched-chain amino acid transport system, permease component protein (characterized, see rationale) 38% 100% 206.1 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-isoleucine catabolism livH med ABC transporter permease (characterized, see rationale) 37% 100% 193.7 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-leucine catabolism livH med ABC transporter permease (characterized, see rationale) 37% 100% 193.7 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-phenylalanine catabolism livH med ABC transporter permease (characterized, see rationale) 37% 100% 193.7 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-serine catabolism Ac3H11_1695 med ABC transporter permease (characterized, see rationale) 37% 100% 193.7 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-tyrosine catabolism Ac3H11_1695 med ABC transporter permease (characterized, see rationale) 37% 100% 193.7 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-arginine catabolism braD med Transmembrane component of a broad range amino acid ABC transporter (characterized, see rationale) 33% 100% 174.9 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-glutamate catabolism braD med Transmembrane component of a broad range amino acid ABC transporter (characterized, see rationale) 33% 100% 174.9 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-histidine catabolism braD med Transmembrane component of a broad range amino acid ABC transporter (characterized, see rationale) 33% 100% 174.9 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-valine catabolism livH med Transmembrane component of a broad range amino acid ABC transporter (characterized, see rationale) 33% 100% 174.9 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
D-alanine catabolism AZOBR_RS08235 med L-proline and D-alanine ABC transporter, permease component 1 (characterized) 34% 100% 170.6 ABC amino acid transporter, permease component, component of Uptake transporter, CamABCD of cholate (steroid) metabolites, 1β(2'-propanoate)-3aα-H-4α(3"(R)-hydroxy-3"-propanoate)-7aβ-methylhexahydro-5-indanone and a desaturated analog 37% 170.2
L-proline catabolism AZOBR_RS08235 med L-proline and D-alanine ABC transporter, permease component 1 (characterized) 34% 100% 170.6 ABC amino acid transporter, permease component, component of Uptake transporter, CamABCD of cholate (steroid) metabolites, 1β(2'-propanoate)-3aα-H-4α(3"(R)-hydroxy-3"-propanoate)-7aβ-methylhexahydro-5-indanone and a desaturated analog 37% 170.2
L-alanine catabolism braD lo High-affinity branched-chain amino acid transport system permease protein BraD, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 34% 98% 166.4 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-serine catabolism braD lo High-affinity branched-chain amino acid transport system permease protein BraD, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 34% 98% 166.4 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-threonine catabolism braD lo High-affinity branched-chain amino acid transport system permease protein BraD, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 34% 98% 166.4 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-histidine catabolism natD lo NatD aka LivH aka SLR0949, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 31% 98% 156 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-leucine catabolism natD lo NatD aka LivH aka SLR0949, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 31% 98% 156 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-proline catabolism natD lo NatD aka LivH aka SLR0949, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 31% 98% 156 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-isoleucine catabolism natD lo NatD, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 31% 97% 150.6 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6
L-valine catabolism natD lo NatD, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 31% 97% 150.6 L-proline and D-alanine ABC transporter, permease component 1 34% 170.6

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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