GapMind for catabolism of small carbon sources

 

Protein WP_011159691.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011159691.1

Length: 238 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 8 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
2-deoxy-D-ribonate catabolism atoA hi acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (characterized) 68% 100% 325.9
2-deoxy-D-ribose catabolism atoA hi acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (characterized) 68% 100% 325.9
L-leucine catabolism atoA hi acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (characterized) 68% 100% 325.9
L-phenylalanine catabolism atoA hi acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (characterized) 68% 100% 325.9
L-tyrosine catabolism atoA hi acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) (characterized) 68% 100% 325.9
4-hydroxybenzoate catabolism pcaI med 3-oxoadipate CoA-transferase subunit A; EC 2.8.3.6 (characterized) 52% 96% 223.8 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) 68% 325.9
L-tryptophan catabolism pcaI med 3-oxoadipate CoA-transferase subunit A; EC 2.8.3.6 (characterized) 52% 96% 223.8 acetyl-CoA:acetoacetate CoA transferase, A subunit (EC 2.8.3.8) 68% 325.9
L-lysine catabolism ctfA med Butyrate--acetoacetate CoA-transferase subunit A; Short=Coat A; EC 2.8.3.9 (characterized, see rationale) 42% 95% 175.6 3-oxoacid CoA-transferase (EC 2.8.3.5) 72% 334.0

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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