GapMind for catabolism of small carbon sources

 

Protein WP_011160280.1 in Rhodopseudomonas palustris CGA009

Annotation: NCBI__GCF_000195775.1:WP_011160280.1

Length: 293 amino acids

Source: GCF_000195775.1 in NCBI

Candidate for 10 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
4-hydroxybenzoate catabolism fadB med 3-hydroxybutyryl-CoA dehydrogenase; EC 1.1.1.157 (characterized) 55% 99% 304.3 Probable 3-hydroxybutyryl-CoA dehydrogenase; Beta-hydroxybutyryl-CoA dehydrogenase; BHBD; EC 1.1.1.157 54% 302.0
4-hydroxybenzoate catabolism paaH med 3-hydroxybutyryl-CoA dehydrogenase; EC 1.1.1.157 (characterized) 55% 99% 304.3 Probable 3-hydroxybutyryl-CoA dehydrogenase; Beta-hydroxybutyryl-CoA dehydrogenase; BHBD; EC 1.1.1.157 54% 302.0
L-arginine catabolism fadB med 3-hydroxybutyryl-CoA dehydrogenase; EC 1.1.1.157 (characterized) 55% 99% 304.3 Probable 3-hydroxybutyryl-CoA dehydrogenase; Beta-hydroxybutyryl-CoA dehydrogenase; BHBD; EC 1.1.1.157 54% 302.0
L-citrulline catabolism fadB med 3-hydroxybutyryl-CoA dehydrogenase; EC 1.1.1.157 (characterized) 55% 99% 304.3 Probable 3-hydroxybutyryl-CoA dehydrogenase; Beta-hydroxybutyryl-CoA dehydrogenase; BHBD; EC 1.1.1.157 54% 302.0
L-lysine catabolism fadB med 3-hydroxybutyryl-CoA dehydrogenase; EC 1.1.1.157 (characterized) 55% 99% 304.3 Probable 3-hydroxybutyryl-CoA dehydrogenase; Beta-hydroxybutyryl-CoA dehydrogenase; BHBD; EC 1.1.1.157 54% 302.0
phenylacetate catabolism fadB med 3-hydroxybutyryl-CoA dehydrogenase; EC 1.1.1.157 (characterized) 55% 99% 304.3 Probable 3-hydroxybutyryl-CoA dehydrogenase; Beta-hydroxybutyryl-CoA dehydrogenase; BHBD; EC 1.1.1.157 54% 302.0
phenylacetate catabolism paaH med 3-hydroxybutyryl-CoA dehydrogenase; EC 1.1.1.157 (characterized) 55% 99% 304.3 Probable 3-hydroxybutyryl-CoA dehydrogenase; Beta-hydroxybutyryl-CoA dehydrogenase; BHBD; EC 1.1.1.157 54% 302.0
L-phenylalanine catabolism fadB med 3-hydroxybutyryl-CoA dehydrogenase; EC 1.1.1.157 (characterized) 55% 99% 304.3 Probable 3-hydroxybutyryl-CoA dehydrogenase; Beta-hydroxybutyryl-CoA dehydrogenase; BHBD; EC 1.1.1.157 54% 302.0
L-phenylalanine catabolism paaH med 3-hydroxybutyryl-CoA dehydrogenase; EC 1.1.1.157 (characterized) 55% 99% 304.3 Probable 3-hydroxybutyryl-CoA dehydrogenase; Beta-hydroxybutyryl-CoA dehydrogenase; BHBD; EC 1.1.1.157 54% 302.0
L-proline catabolism fadB med 3-hydroxybutyryl-CoA dehydrogenase; EC 1.1.1.157 (characterized) 55% 99% 304.3 Probable 3-hydroxybutyryl-CoA dehydrogenase; Beta-hydroxybutyryl-CoA dehydrogenase; BHBD; EC 1.1.1.157 54% 302.0

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195775.1

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