Align carbamoyl-phosphate synthase (glutamine-hydrolysing) (EC 6.3.5.5) (characterized)
to candidate WP_011190337.1 DP_RS15660 carbamoyl-phosphate synthase large subunit
Query= BRENDA::P00968
(1073 letters)
>NCBI__GCF_000025945.1:WP_011190337.1
Length = 1073
Score = 1258 bits (3254), Expect = 0.0
Identities = 638/1068 (59%), Positives = 806/1068 (75%), Gaps = 6/1068 (0%)
Query: 1 MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEM 60
MPKRTDIK ILI+G+GPI+I QACEFDYSGAQA KAL+EEGY VIL+NSNPATIMTDPE+
Sbjct: 1 MPKRTDIKKILIIGSGPIIISQACEFDYSGAQAVKALKEEGYEVILINSNPATIMTDPEL 60
Query: 61 ADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATA 120
ADATYIEPI E V K+I KERPDA+LPT+GGQTALN A++L GVLE++ V ++ A
Sbjct: 61 ADATYIEPITPECVTKVIAKERPDALLPTLGGQTALNTAIKLAELGVLEQYNVELLAADI 120
Query: 121 DAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGG 180
I KAE R F AM IGL S I H +E A+A D+GFP I+RPSFT+GG+GGG
Sbjct: 121 AVIKKAEGREEFRDAMHAIGLNVPESAIVHDLESAMAAGEDIGFPIIVRPSFTLGGTGGG 180
Query: 181 IAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAM 240
IAYNR+E EE+C GLDLS T E++++ SL+GWKE+E+EV+RDKNDN +I+CSIEN DAM
Sbjct: 181 IAYNRQELEELCTSGLDLSMTTEIMVERSLLGWKEFELEVMRDKNDNVVIICSIENIDAM 240
Query: 241 GIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEM 300
G+HTGDSITVAPAQTLTD+EYQ MR+A++A++REIGVETGGSNVQFAVNP +G L++IEM
Sbjct: 241 GVHTGDSITVAPAQTLTDREYQEMRDAAVAIIREIGVETGGSNVQFAVNPADGELMIIEM 300
Query: 301 NPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIP 360
NPRVSRSSALASKATGFPIAK+AAKLAVGYTLDEL NDIT T ASFEP+IDY V KIP
Sbjct: 301 NPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELKNDITE-ETYASFEPTIDYCVVKIP 359
Query: 361 RFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGF--DPKVSLDDP 418
R+ FEKF A D+L+T MKSVGE M++GRT +E+ QKA+R LE G GF D K L D
Sbjct: 360 RWTFEKFPEAEDKLSTAMKSVGETMSMGRTFKEAFQKAMRSLETGRAGFGGDGKELLTDI 419
Query: 419 EALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAE 478
+A+ + L+ + R+ YI +A + G+S++ + T ID WFL +++V EE++
Sbjct: 420 DAID-LEHNLRTPNSKRVGYIHEALKRGMSLEEIHEFTLIDPWFLYNFKQIVEKEEEIIA 478
Query: 479 VGITGLNADFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFAT 538
G G++A+FLR K GF+D +L L G E +IRKLR + ++ PVYK VDTC AEF +
Sbjct: 479 HGFQGIDAEFLRGCKEYGFSDIQLGYLTGTTEDDIRKLRLEMEIRPVYKMVDTCGAEFES 538
Query: 539 DTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIM 598
+T Y YSTYE+E EA T +KI++LGGGPNRIGQGIEFDYCCVHA+ AL+E G E+IM
Sbjct: 539 NTPYYYSTYEQENEAI-ETSGKKIIILGGGPNRIGQGIEFDYCCVHAAFALKELGVESIM 597
Query: 599 VNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAG 658
+N NPETVSTDYDTSD+LYFEP+T EDVL I+ EKP GVIVQ+GGQTPL LA LE AG
Sbjct: 598 INSNPETVSTDYDTSDKLYFEPLTREDVLNIIEQEKPYGVIVQFGGQTPLNLAVPLENAG 657
Query: 659 VPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSY 718
+ +IGT PDAIDRAEDR+RFQ +++L L+QP N TV+ +E A+ A IGYP+VVRPSY
Sbjct: 658 IRIIGTQPDAIDRAEDRKRFQQFLQKLGLRQPENDTVSTLEEALASANRIGYPVVVRPSY 717
Query: 719 VLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGI 778
VLGGR M IVY + +R + + + P+L+D FL +A+EVDVDA+CDGE +IGGI
Sbjct: 718 VLGGRNMRIVYTDQGIRDFMIAVGGTNLEHPILVDKFLQEAIEVDVDALCDGEDTIIGGI 777
Query: 779 MEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVY 838
MEHIE+AG+HSGDS+C LP +TLS E+ ++ + +A EL V GLMNVQFA+K+ +VY
Sbjct: 778 MEHIEEAGIHSGDSSCVLPPHTLSLELVKEIKAASKAMAKELGVIGLMNVQFAIKDKQVY 837
Query: 839 LIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFN 898
++EVNPRA+RTVPFVSKATGVPLAK+A +VM G L + G+T++ +++VKE V PF+
Sbjct: 838 ILEVNPRASRTVPFVSKATGVPLAKLATKVMMGARLKDLGLTRDPYIDHWAVKEAVFPFD 897
Query: 899 KFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVV 958
+F VD LLGPEM+STGEVMG+ A AKA L S ST+ G +SVR+ DK V
Sbjct: 898 RFDKVDTLLGPEMKSTGEVMGIDDNLGLAIAKAHLASGSTLPTEGTVFISVRDNDKAHSV 957
Query: 959 DLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTS 1018
++A LL+ GF + AT GTA L + I+ VNK+ +GRPHI D++++G+ +IINT+
Sbjct: 958 EVAKSLLQLGFSICATAGTAQYLQDKDIDCSPVNKISQGRPHILDKVQDGQIAWIINTSL 1017
Query: 1019 GRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQ 1066
GRR EDS IRRSAL Y + Y TT+ G A A++ D + K ++VQ
Sbjct: 1018 GRRTTEDSYQIRRSALDYHIPYTTTITGAAAVIKAIH-DLSTKELNVQ 1064
Lambda K H
0.318 0.135 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3000
Number of extensions: 122
Number of successful extensions: 14
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1073
Length of database: 1073
Length adjustment: 45
Effective length of query: 1028
Effective length of database: 1028
Effective search space: 1056784
Effective search space used: 1056784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_011190337.1 DP_RS15660 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.11390.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11390.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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