GapMind for catabolism of small carbon sources

 

Protein WP_011306579.1 in Methanosarcina barkeri Fusaro

Annotation: NCBI__GCF_000195895.1:WP_011306579.1

Length: 573 amino acids

Source: GCF_000195895.1 in NCBI

Candidate for 4 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-isoleucine catabolism pccA2 lo acyl CoA carboxylase biotin carboxyl carrier protein subunit (EC 2.1.3.15; EC 6.4.1.3; EC 6.3.4.14) (characterized) 31% 56% 51.6 pyruvate carboxylase subunit B (EC 6.4.1.1) 64% 773.9
propionate catabolism pccA2 lo acyl CoA carboxylase biotin carboxyl carrier protein subunit (EC 2.1.3.15; EC 6.4.1.3; EC 6.3.4.14) (characterized) 31% 56% 51.6 pyruvate carboxylase subunit B (EC 6.4.1.1) 64% 773.9
L-threonine catabolism pccA2 lo acyl CoA carboxylase biotin carboxyl carrier protein subunit (EC 2.1.3.15; EC 6.4.1.3; EC 6.3.4.14) (characterized) 31% 56% 51.6 pyruvate carboxylase subunit B (EC 6.4.1.1) 64% 773.9
L-valine catabolism pccA2 lo acyl CoA carboxylase biotin carboxyl carrier protein subunit (EC 2.1.3.15; EC 6.4.1.3; EC 6.3.4.14) (characterized) 31% 56% 51.6 pyruvate carboxylase subunit B (EC 6.4.1.1) 64% 773.9

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195895.1

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