GapMind for catabolism of small carbon sources

 

Protein WP_011308167.1 in Methanosarcina barkeri Fusaro

Annotation: NCBI__GCF_000195895.1:WP_011308167.1

Length: 266 amino acids

Source: GCF_000195895.1 in NCBI

Candidate for 16 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-alanine catabolism braF lo High-affinity branched-chain amino acid transport ATP-binding protein BraF, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 32% 95% 125.6 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-isoleucine catabolism livG lo High-affinity branched-chain amino acid transport ATP-binding protein BraF, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 32% 95% 125.6 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-leucine catabolism livG lo High-affinity branched-chain amino acid transport ATP-binding protein BraF, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 32% 95% 125.6 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-serine catabolism braF lo High-affinity branched-chain amino acid transport ATP-binding protein BraF, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 32% 95% 125.6 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-threonine catabolism braF lo High-affinity branched-chain amino acid transport ATP-binding protein BraF, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 32% 95% 125.6 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-valine catabolism livG lo High-affinity branched-chain amino acid transport ATP-binding protein BraF, component of Branched chain amino acid uptake transporter. Transports alanine (characterized) 32% 95% 125.6 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-phenylalanine catabolism livG lo High-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG (characterized, see rationale) 31% 96% 123.2 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-arginine catabolism braF lo ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 31% 92% 119.4 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-glutamate catabolism braF lo ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 31% 92% 119.4 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-histidine catabolism braF lo ATP-binding component of a broad range amino acid ABC transporter (characterized, see rationale) 31% 92% 119.4 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-histidine catabolism natA lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 30% 90% 114.4 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-leucine catabolism natA lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 30% 90% 114.4 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-proline catabolism natA lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 30% 90% 114.4 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-proline catabolism HSERO_RS00900 lo ABC transporter ATP-binding protein (characterized, see rationale) 31% 91% 92.4 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-serine catabolism Ac3H11_1692 lo ABC transporter ATP-binding protein (characterized, see rationale) 31% 91% 92.4 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8
L-tyrosine catabolism Ac3H11_1692 lo ABC transporter ATP-binding protein (characterized, see rationale) 31% 91% 92.4 Linearmycin resistance ATP-binding protein LnrL; EC 7.6.2.- 42% 191.8

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195895.1

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