GapMind for catabolism of small carbon sources

 

Protein WP_011308283.1 in Methanosarcina barkeri Fusaro

Annotation: NCBI__GCF_000195895.1:WP_011308283.1

Length: 356 amino acids

Source: GCF_000195895.1 in NCBI

Candidate for 8 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-alanine catabolism braF lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 31% 90% 112.8 bacitracin ABC transporter, ATP-binding protein BcrA 35% 192.2
L-histidine catabolism natA lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 31% 90% 112.8 bacitracin ABC transporter, ATP-binding protein BcrA 35% 192.2
L-leucine catabolism natA lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 31% 90% 112.8 bacitracin ABC transporter, ATP-binding protein BcrA 35% 192.2
L-proline catabolism natA lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 31% 90% 112.8 bacitracin ABC transporter, ATP-binding protein BcrA 35% 192.2
L-serine catabolism braF lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 31% 90% 112.8 bacitracin ABC transporter, ATP-binding protein BcrA 35% 192.2
L-threonine catabolism braF lo NatA aka BRAF aka SLR0467, component of Leucine/proline/alanine/serine/glycine (and possibly histidine) porter, NatABCDE (characterized) 31% 90% 112.8 bacitracin ABC transporter, ATP-binding protein BcrA 35% 192.2
L-isoleucine catabolism natA lo NatA, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 30% 89% 109.4 bacitracin ABC transporter, ATP-binding protein BcrA 35% 192.2
L-valine catabolism natA lo NatA, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 30% 89% 109.4 bacitracin ABC transporter, ATP-binding protein BcrA 35% 192.2

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195895.1

New query