GapMind for catabolism of small carbon sources

 

Protein WP_011308458.1 in Methanosarcina barkeri Fusaro

Annotation: NCBI__GCF_000195895.1:WP_011308458.1

Length: 605 amino acids

Source: GCF_000195895.1 in NCBI

Candidate for 18 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-alanine catabolism braG lo NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 32% 95% 110.9 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
L-isoleucine catabolism natE lo NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 32% 95% 110.9 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
L-leucine catabolism natE lo NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 32% 95% 110.9 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
L-proline catabolism natE lo NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 32% 95% 110.9 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
L-serine catabolism braG lo NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 32% 95% 110.9 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
L-threonine catabolism braG lo NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 32% 95% 110.9 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
L-valine catabolism natE lo NatE, component of The neutral amino acid permease, N-1 (transports pro, phe, leu, gly, ala, ser, gln and his, but gln and his are not transported via NatB) (characterized) 32% 95% 110.9 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
L-isoleucine catabolism livG lo High-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG (characterized, see rationale) 31% 96% 107.5 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
L-phenylalanine catabolism livG lo High-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG (characterized, see rationale) 31% 96% 107.5 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
D-alanine catabolism AZOBR_RS08245 lo Leucine/isoleucine/valine ABC transporter,ATPase component; EC 3.6.3.- (characterized, see rationale) 31% 84% 104.4 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
L-proline catabolism AZOBR_RS08245 lo Leucine/isoleucine/valine ABC transporter,ATPase component; EC 3.6.3.- (characterized, see rationale) 31% 84% 104.4 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
L-phenylalanine catabolism livF lo High-affinity branched-chain amino acid transport ATP-binding protein (characterized, see rationale) 31% 99% 100.5 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
D-cellobiose catabolism mglA lo glucose transporter, ATPase component (characterized) 30% 84% 91.3 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
D-glucose catabolism mglA lo glucose transporter, ATPase component (characterized) 30% 84% 91.3 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
lactose catabolism mglA lo glucose transporter, ATPase component (characterized) 30% 84% 91.3 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
D-maltose catabolism mglA lo glucose transporter, ATPase component (characterized) 30% 84% 91.3 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
sucrose catabolism mglA lo glucose transporter, ATPase component (characterized) 30% 84% 91.3 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9
trehalose catabolism mglA lo glucose transporter, ATPase component (characterized) 30% 84% 91.3 ABC transporter related, component of ThiW/CbiQ/CbiO homologues (ThiW: 174 aas; 5 putative TMSs) 33% 278.9

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195895.1

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