GapMind for catabolism of small carbon sources

 

Protein WP_011308463.1 in Methanosarcina barkeri Fusaro

Annotation: NCBI__GCF_000195895.1:WP_011308463.1

Length: 224 amino acids

Source: GCF_000195895.1 in NCBI

Candidate for 7 steps in catabolism of small carbon sources

Pathway Step Score Similar to Id. Cov. Bits Other hit Other id. Other bits
L-histidine catabolism Ac3H11_2560 lo ABC transporter for L-Histidine, ATPase component (characterized) 36% 81% 133.3 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- 44% 194.5
L-isoleucine catabolism livF lo high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF (characterized) 32% 84% 102.8 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- 44% 194.5
L-leucine catabolism livF lo high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF (characterized) 32% 84% 102.8 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- 44% 194.5
L-phenylalanine catabolism livF lo high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF (characterized) 32% 84% 102.8 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- 44% 194.5
L-valine catabolism livF lo high-affinity branched-chain amino acid ABC transporter, ATP-binding protein LivF (characterized) 32% 84% 102.8 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- 44% 194.5
D-alanine catabolism AZOBR_RS08250 lo Leucine//isoleucine/valine ABC transporter,ATPase component; EC 3.6.3.- (characterized, see rationale) 34% 89% 100.5 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- 44% 194.5
L-proline catabolism AZOBR_RS08250 lo Leucine//isoleucine/valine ABC transporter,ATPase component; EC 3.6.3.- (characterized, see rationale) 34% 89% 100.5 Macrolide export ATP-binding/permease protein MacB; EC 7.6.2.- 44% 194.5

Sequence Analysis Tools

Do not recognize NCBI assembly GCF_000195895.1

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