Alignments for a candidate for ilvD in Trichormus variabilis ATCC 29413

Align dihydroxyacid dehydratase (EC 4.2.1.9) (characterized)
to candidate WP_011316359.1 AVA_RS26310 dihydroxy-acid dehydratase

Query= metacyc::MONOMER-18815
         (557 letters)



>NCBI__GCF_000204075.1:WP_011316359.1
          Length = 562

 Score =  780 bits (2014), Expect = 0.0
 Identities = 390/557 (70%), Positives = 467/557 (83%)

Query: 1   MAFNKRSQNITQGVARSPNRSMYYALGYKKEDFDKPMVGIANGHSTITPCNAGLQRLADA 60
           M+ N RSQ +TQGV RSPNR+M  A+G+K EDF+K +VGIANG+STITPCN G+ +LA  
Sbjct: 1   MSENLRSQIVTQGVQRSPNRAMLRAVGFKDEDFNKAIVGIANGYSTITPCNMGINQLALR 60

Query: 61  AIDAIKASDANPQVFGTPTISDGMSMGTEGMKYSLISREVIADCIETAAQGQWMDGVVVI 120
           A   IK++ A PQ+FGT TISDG+SMGTEGMKYSL+SREVIAD IETA  GQ MDGV+ I
Sbjct: 61  AEVGIKSAGAMPQMFGTITISDGISMGTEGMKYSLVSREVIADSIETACTGQSMDGVLAI 120

Query: 121 GGCDKNMPGGMIALARTNVPGIYVYGGTIKPGNWKGKDLTIVSSFEAVGEFTAGRMSQED 180
           GGCDKNMPG M+A+AR N+P I+VYGGTIKPG++ G+DLT+VSSFEAVG+++AG++  ++
Sbjct: 121 GGCDKNMPGAMLAIARMNIPAIFVYGGTIKPGHYNGRDLTVVSSFEAVGQYSAGKIDDKE 180

Query: 181 FEGVEKNACPSTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV 240
              VE +ACP  GSCGGM+TANTMS +FEALGMSL YSSTMA  D EK DS  +SA VLV
Sbjct: 181 LLEVESHACPGAGSCGGMFTANTMSGAFEALGMSLPYSSTMAAEDAEKADSTEKSAFVLV 240

Query: 241 EAIKQDIKPRDIITRKSIENAVALIMATGGSTNAVLHYLAIAHAAEVEWTIDDFERIRRK 300
           EAI++ I P  IIT KSIENA+++IMA GGSTNAVLH+LAIAHAA VE T+DDFE IR +
Sbjct: 241 EAIRKQILPSQIITCKSIENAISVIMAVGGSTNAVLHFLAIAHAANVELTLDDFETIRAR 300

Query: 301 VPVICNLKPSGQYVATDLHKAGGIPQVMKILLKAGMLHGDCLTITGRTLAEELENVPDTP 360
           VPV+C+LKPSG+YVATDLH+AGGIPQVMK+LL   +LHGDCLTITG+T+AE L ++P+ P
Sbjct: 301 VPVLCDLKPSGKYVATDLHEAGGIPQVMKMLLVHDLLHGDCLTITGQTIAEILADIPEEP 360

Query: 361 RADQDVILPIEKALYAEGHLAILKGNLAEEGAVAKITGLKNPVITGPARVFEDEQSAMEA 420
             +QDVI      +Y +GHLAIL+GNLA EGAVAKITG+K PVITG ARVFE E+++++A
Sbjct: 361 SVNQDVIRTWNNPMYPQGHLAILRGNLATEGAVAKITGVKKPVITGTARVFESEEASLDA 420

Query: 421 ILADKINAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMV 480
           ILA KI AGDILV+RY GPKGGPGM EMLAPTSAIIG GLG++VG ITDGRFSGGT+GMV
Sbjct: 421 ILAGKIQAGDILVIRYEGPKGGPGMREMLAPTSAIIGAGLGDAVGLITDGRFSGGTYGMV 480

Query: 481 VGHVAPEAYVGGTIALVQEGDSITIDAHKLLLQLNVADEELARRRANWKQPAPRYTRGVL 540
           VGHVAPEA VGG IALV+EGDSITIDA   LLQLN++D ELARR ANW+ P PRYT+GVL
Sbjct: 481 VGHVAPEAAVGGAIALVEEGDSITIDAPARLLQLNISDHELARRHANWQPPVPRYTKGVL 540

Query: 541 AKFSKLASTASKGAVTD 557
           AK++KL S++S GAVTD
Sbjct: 541 AKYAKLVSSSSLGAVTD 557


Lambda     K      H
   0.316    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1030
Number of extensions: 35
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 562
Length adjustment: 36
Effective length of query: 521
Effective length of database: 526
Effective search space:   274046
Effective search space used:   274046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)

Align candidate WP_011316359.1 AVA_RS26310 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))

Software error:

../bin/blast/fastacmd -i /tmp/list.14744.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14744.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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