Align Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 (uncharacterized)
to candidate WP_011316524.1 AVA_RS27160 phosphoribosyl-AMP cyclohydrolase
Query= curated2:Q3M244
(116 letters)
>NCBI__GCF_000204075.1:WP_011316524.1
Length = 116
Score = 246 bits (628), Expect = 7e-71
Identities = 116/116 (100%), Positives = 116/116 (100%)
Query: 1 MNQNLLWFEKLKFNNQDLIPAIAQDYRDGTVLMMAWMNSESIQKTLSTGEAHYWSRSRSQ 60
MNQNLLWFEKLKFNNQDLIPAIAQDYRDGTVLMMAWMNSESIQKTLSTGEAHYWSRSRSQ
Sbjct: 1 MNQNLLWFEKLKFNNQDLIPAIAQDYRDGTVLMMAWMNSESIQKTLSTGEAHYWSRSRSQ 60
Query: 61 LWHKGATSGHIQKVKELFYDCDGDTILLKVEQIGDIACHTGARSCFFNAVPIYPQS 116
LWHKGATSGHIQKVKELFYDCDGDTILLKVEQIGDIACHTGARSCFFNAVPIYPQS
Sbjct: 61 LWHKGATSGHIQKVKELFYDCDGDTILLKVEQIGDIACHTGARSCFFNAVPIYPQS 116
Lambda K H
0.321 0.133 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 144
Number of extensions: 5
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 116
Length of database: 116
Length adjustment: 13
Effective length of query: 103
Effective length of database: 103
Effective search space: 10609
Effective search space used: 10609
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)
Align candidate WP_011316524.1 AVA_RS27160 (phosphoribosyl-AMP cyclohydrolase)
to HMM PF01502 (PRA-CH)
../bin/blast/fastacmd -i /tmp/list.851.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.851.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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