Align dihydroxyacid dehydratase (EC 4.2.1.9) (characterized)
to candidate WP_011316921.1 AVA_RS00115 dihydroxy-acid dehydratase
Query= metacyc::MONOMER-18815 (557 letters) >NCBI__GCF_000204075.1:WP_011316921.1 Length = 563 Score = 801 bits (2068), Expect = 0.0 Identities = 395/557 (70%), Positives = 468/557 (84%) Query: 1 MAFNKRSQNITQGVARSPNRSMYYALGYKKEDFDKPMVGIANGHSTITPCNAGLQRLADA 60 M+ N RS+ ITQGV RSPNR+M A+G++ DF K +VG+ANG+STITPCN G+ +LA Sbjct: 1 MSENLRSKAITQGVQRSPNRAMLRAVGFQDADFTKAIVGVANGYSTITPCNMGINQLAQR 60 Query: 61 AIDAIKASDANPQVFGTPTISDGMSMGTEGMKYSLISREVIADCIETAAQGQWMDGVVVI 120 A I + A PQ+FGT TISDG+SMGTEGMKYSL+SREVIAD IET GQ +DGV+ I Sbjct: 61 AEAGINRAGAKPQIFGTITISDGISMGTEGMKYSLVSREVIADSIETVCNGQSLDGVIAI 120 Query: 121 GGCDKNMPGGMIALARTNVPGIYVYGGTIKPGNWKGKDLTIVSSFEAVGEFTAGRMSQED 180 GGCDKNMPG MIA+AR N+P I+VYGGTIKPG++ GKDLT+VSSFEAVGE++AG++ + + Sbjct: 121 GGCDKNMPGAMIAIARMNIPAIFVYGGTIKPGHYNGKDLTVVSSFEAVGEYSAGKIDENE 180 Query: 181 FEGVEKNACPSTGSCGGMYTANTMSSSFEALGMSLLYSSTMANPDQEKVDSAAESARVLV 240 VE+NACP GSCGGMYTANTMSS+FEALGMSL YSSTMA D EK DS ESA+VLV Sbjct: 181 LLAVERNACPGAGSCGGMYTANTMSSAFEALGMSLPYSSTMAAEDDEKADSTEESAKVLV 240 Query: 241 EAIKQDIKPRDIITRKSIENAVALIMATGGSTNAVLHYLAIAHAAEVEWTIDDFERIRRK 300 EAI+ + PR IITRKSIENA+A+IMA GGSTNAVLH+LAIA AA VE +DDFE IR + Sbjct: 241 EAIRHQLLPRQIITRKSIENAIAVIMAVGGSTNAVLHFLAIARAAGVELNLDDFETIRGR 300 Query: 301 VPVICNLKPSGQYVATDLHKAGGIPQVMKILLKAGMLHGDCLTITGRTLAEELENVPDTP 360 VPV+C+LKPSG+YVATDLHKAGGIPQVMK+LL G+LHGDC+TITG+T+AE L ++P+ P Sbjct: 301 VPVLCDLKPSGRYVATDLHKAGGIPQVMKMLLVHGLLHGDCITITGKTIAEVLADIPEEP 360 Query: 361 RADQDVILPIEKALYAEGHLAILKGNLAEEGAVAKITGLKNPVITGPARVFEDEQSAMEA 420 +QDVI P K +YA+GHLAILKGNLA EGAVAKITG+KNPVITGPA+VFE E+ ++A Sbjct: 361 SPNQDVIRPWNKPMYAQGHLAILKGNLATEGAVAKITGVKNPVITGPAKVFESEEDCLDA 420 Query: 421 ILADKINAGDILVLRYLGPKGGPGMPEMLAPTSAIIGKGLGESVGFITDGRFSGGTWGMV 480 ILA KI AGD++V+RY GPKGGPGM EMLAPTSAIIG GLG+SVG ITDGRFSGGT+GMV Sbjct: 421 ILAGKIKAGDVIVVRYEGPKGGPGMREMLAPTSAIIGAGLGDSVGLITDGRFSGGTYGMV 480 Query: 481 VGHVAPEAYVGGTIALVQEGDSITIDAHKLLLQLNVADEELARRRANWKQPAPRYTRGVL 540 VGHVAPEA VGG IALVQEGDSITIDAH LQLN++DEELA RRANW+ PRYT+G+L Sbjct: 481 VGHVAPEAAVGGAIALVQEGDSITIDAHTRSLQLNISDEELAHRRANWQPRPPRYTKGIL 540 Query: 541 AKFSKLASTASKGAVTD 557 AK++KL +++S GAVTD Sbjct: 541 AKYAKLVASSSVGAVTD 557 Lambda K H 0.316 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 1069 Number of extensions: 41 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 557 Length of database: 563 Length adjustment: 36 Effective length of query: 521 Effective length of database: 527 Effective search space: 274567 Effective search space used: 274567 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 53 (25.0 bits)
Align candidate WP_011316921.1 AVA_RS00115 (dihydroxy-acid dehydratase)
to HMM TIGR00110 (ilvD: dihydroxy-acid dehydratase (EC 4.2.1.9))
../bin/blast/fastacmd -i /tmp/list.15076.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.15076.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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