Alignments for a candidate for argC in Trichormus variabilis ATCC 29413

Align N-acetylglutamylphosphate reductase (EC 1.2.1.38) (characterized)
to candidate WP_011317314.1 AVA_RS02170 N-acetyl-gamma-glutamyl-phosphate reductase

Query= reanno::Smeli:SMc01801
         (310 letters)



>NCBI__GCF_000204075.1:WP_011317314.1
          Length = 322

 Score =  295 bits (754), Expect = 1e-84
 Identities = 158/314 (50%), Positives = 213/314 (67%), Gaps = 9/314 (2%)

Query: 2   KPKIFIDGEHGTTGLQIRVRMAGRTDLELLSIPEAERRNAAMREDLLNSADIAILCLPDD 61
           KPKIFIDGE GTTGLQI  R+  R D+EL+SI  ++R++A  R  LLNS D+AILCLPDD
Sbjct: 3   KPKIFIDGEAGTTGLQIYSRLNERDDIELVSIAASKRKDADERAKLLNSVDVAILCLPDD 62

Query: 62  ASREAVAMVAGNNRVRIIDTSTAHRVAPDWAYGFAEMDKAQPQRIRDARHVANPGCYPTG 121
           A+REAV++V  +++V+I+D STA+R A  W YGF E++  Q ++I +A+ V+NPGCYPTG
Sbjct: 63  AAREAVSLVH-SSQVKILDASTAYRTAQGWVYGFPELNPGQREKIANAQFVSNPGCYPTG 121

Query: 122 AIALIRPLRQAGILPDGYPVTVNAVSGYTGGGKQMIAQMEDDQNPDHIGA----PHFLYG 177
            +A +RPL   GILP  +P+T+NAVSGY+GGGK +I Q  D  +    GA    P  +YG
Sbjct: 122 FLACVRPLIAQGILPSSFPITINAVSGYSGGGKSLI-QKYDSFHEQQKGATSDYPFGIYG 180

Query: 178 LTLKHKHVPEMKMHGLLERAPVFSPSVGKFAQGMIVQVPLYLEDLAAGATLETIHRALVD 237
           L   HKHV EM  H  L   P+F P+VG F QGM+VQ+PL L  L    + E IH+A+  
Sbjct: 181 LQFGHKHVKEMHQHSGLASPPLFIPAVGDFEQGMLVQIPLPLWTLDNPPSGEEIHQAIAQ 240

Query: 238 HYAGQSIVEVVPLDESAKL---ARIDATELAGSDAMKLFVFGTKGGAHVNLVALLDNLGK 294
           +Y G+  V+V    + + L     +DAT + G++ +++FVF         LVA LDNLGK
Sbjct: 241 YYQGEKFVQVASFKDPSLLRDGTFLDATAVNGTNIVQVFVFANDNTKEALLVARLDNLGK 300

Query: 295 GASGAAVQNMDLML 308
           GASGAAVQN+++ML
Sbjct: 301 GASGAAVQNLNIML 314


Lambda     K      H
   0.319    0.136    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 287
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 322
Length adjustment: 27
Effective length of query: 283
Effective length of database: 295
Effective search space:    83485
Effective search space used:    83485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)

Align candidate WP_011317314.1 AVA_RS02170 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01851 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.32371.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.32371.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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