Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate WP_011317354.1 AVA_RS02395 4-hydroxy-tetrahydrodipicolinate reductase
Query= BRENDA::Q3MFY8 (278 letters) >NCBI__GCF_000204075.1:WP_011317354.1 Length = 278 Score = 546 bits (1406), Expect = e-160 Identities = 278/278 (100%), Positives = 278/278 (100%) Query: 1 MTNQAPIPVIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLE 60 MTNQAPIPVIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLE Sbjct: 1 MTNQAPIPVIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLE 60 Query: 61 VPITNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQI 120 VPITNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQI Sbjct: 61 VPITNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQI 120 Query: 121 QNLADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAI 180 QNLADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAI Sbjct: 121 QNLADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAI 180 Query: 181 QTAELLAELGKTFNSAIVEETEKIPGARGSLAGEGIRIHSVRLPGLIAHQEVIFGAPGQI 240 QTAELLAELGKTFNSAIVEETEKIPGARGSLAGEGIRIHSVRLPGLIAHQEVIFGAPGQI Sbjct: 181 QTAELLAELGKTFNSAIVEETEKIPGARGSLAGEGIRIHSVRLPGLIAHQEVIFGAPGQI 240 Query: 241 YTLRHDTSDRACYMPGVLLAIRKVLQLKSLVYGLEKIL 278 YTLRHDTSDRACYMPGVLLAIRKVLQLKSLVYGLEKIL Sbjct: 241 YTLRHDTSDRACYMPGVLLAIRKVLQLKSLVYGLEKIL 278 Lambda K H 0.317 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 446 Number of extensions: 9 Number of successful extensions: 1 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 278 Length of database: 278 Length adjustment: 25 Effective length of query: 253 Effective length of database: 253 Effective search space: 64009 Effective search space used: 64009 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 47 (22.7 bits)
Align candidate WP_011317354.1 AVA_RS02395 (4-hydroxy-tetrahydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))
../bin/blast/fastacmd -i /tmp/list.6707.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6707.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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