Align 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7) (characterized)
to candidate WP_011317354.1 AVA_RS02395 4-hydroxy-tetrahydrodipicolinate reductase
Query= BRENDA::Q3MFY8
(278 letters)
>NCBI__GCF_000204075.1:WP_011317354.1
Length = 278
Score = 546 bits (1406), Expect = e-160
Identities = 278/278 (100%), Positives = 278/278 (100%)
Query: 1 MTNQAPIPVIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLE 60
MTNQAPIPVIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLE
Sbjct: 1 MTNQAPIPVIVNGAAGKMGREVVKAIAQAPDLNLLGAIDSSPEHQGKDAGELAGLSEPLE 60
Query: 61 VPITNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQI 120
VPITNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQI
Sbjct: 61 VPITNQLEPMLGYVAGERQGPPGVIVDFTHPDSVYDNVRSAIAYGIRPVVGTTGLSPAQI 120
Query: 121 QNLADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAI 180
QNLADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAI
Sbjct: 121 QNLADFAEKASTGCLIIPNFSIGMVLLQQAAVTASQYFDHVEIIELHHNQKADAPSGTAI 180
Query: 181 QTAELLAELGKTFNSAIVEETEKIPGARGSLAGEGIRIHSVRLPGLIAHQEVIFGAPGQI 240
QTAELLAELGKTFNSAIVEETEKIPGARGSLAGEGIRIHSVRLPGLIAHQEVIFGAPGQI
Sbjct: 181 QTAELLAELGKTFNSAIVEETEKIPGARGSLAGEGIRIHSVRLPGLIAHQEVIFGAPGQI 240
Query: 241 YTLRHDTSDRACYMPGVLLAIRKVLQLKSLVYGLEKIL 278
YTLRHDTSDRACYMPGVLLAIRKVLQLKSLVYGLEKIL
Sbjct: 241 YTLRHDTSDRACYMPGVLLAIRKVLQLKSLVYGLEKIL 278
Lambda K H
0.317 0.136 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 446
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 278
Length adjustment: 25
Effective length of query: 253
Effective length of database: 253
Effective search space: 64009
Effective search space used: 64009
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)
Align candidate WP_011317354.1 AVA_RS02395 (4-hydroxy-tetrahydrodipicolinate reductase)
to HMM TIGR00036 (dapB: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8))
../bin/blast/fastacmd -i /tmp/list.21828.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21828.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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