Alignments for a candidate for ilvA in Trichormus variabilis ATCC 29413

Align Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 (characterized)
to candidate WP_011317547.1 AVA_RS03415 threonine ammonia-lyase, biosynthetic

Query= SwissProt::A0FKE6
         (606 letters)



>NCBI__GCF_000204075.1:WP_011317547.1
          Length = 503

 Score =  553 bits (1425), Expect = e-162
 Identities = 281/500 (56%), Positives = 367/500 (73%), Gaps = 2/500 (0%)

Query: 107 EYLTNILSSKVYDVAYETPLQKAPKLSERLGVNVWLKREDLQPVFSFKIRGAYNMMAKLP 166
           +YL  IL+++VYDVA E+PL+ AP LS RL   + LKRED+Q VFSFK+RGAYN M  L 
Sbjct: 4   DYLVQILTARVYDVAQESPLEYAPNLSARLNNKLLLKREDMQSVFSFKLRGAYNKMVNLT 63

Query: 167 KEQLEKGVICSSAGNHAQGVALSAQRLGCDAVIVMPVTTPDIKWKSVKRLGATVVLVGDS 226
            + L +GVI +SAGNHAQGVAL A++LG  A+IVMPVTTP +K  +VK  G  VVL GD+
Sbjct: 64  PDLLAQGVIAASAGNHAQGVALGAKQLGTRAIIVMPVTTPQVKVDAVKARGGEVVLHGDT 123

Query: 227 YDEAQAYAKKRAESEGRTFIPPFDHPDVIVGQGTVGMEINRQLKDNIHAIFVPVGGGGLI 286
           YD+A AYA++    +G TFI PFD P VI GQGT+GMEI RQ +  IHAIFV +GGGGLI
Sbjct: 124 YDDAYAYARQLEAEKGLTFIHPFDDPHVIAGQGTIGMEILRQYQQPIHAIFVAIGGGGLI 183

Query: 287 AGIAAYLKRVAPDIKIIGVEPLDANALALSLHHGQRVMLDQVGGFADGVAVKVVGEETYR 346
           +GIAAY+KR+ P+IKIIGVEP+DA+A+  SL  G+RV L QVG FADGVAV+ VGEET+R
Sbjct: 184 SGIAAYVKRLRPEIKIIGVEPVDADAMNQSLQAGKRVRLSQVGLFADGVAVREVGEETFR 243

Query: 347 LCEELIDGVVLVGRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKGENVVAI 406
           LC+E +D ++LV  D  CA+IKD+FE+ RSILEPAGALA+AGA+AY +   ++G+ +VA+
Sbjct: 244 LCQEYVDEIILVDTDDTCAAIKDVFEDTRSILEPAGALAIAGAKAYVEREQIQGQTLVAV 303

Query: 407 TSGANMNFDRLRLVTELADVGRQREAVLATFMPEDPGSFKKFAEMVGPMNITEFKYRYNS 466
             GANMNFDRLR V E A+ G +REA+ A  +PE PGS +KF E +G  N+TEF YR  +
Sbjct: 304 ACGANMNFDRLRFVAERAEFGERREAIFAVTIPETPGSLRKFCECIGRRNLTEFNYRI-A 362

Query: 467 DKERALVLYSVGLHTILELEGMVERMESADLQTINLTDNDLVKDHLRHLMGGRTNV-HNE 525
           D++ A +   + +    +   MVE       + ++LTD++L K HLRH++GG + + HNE
Sbjct: 363 DEKIAHIFIGMQIQNRADKIHMVETFAECGFEILDLTDDELTKLHLRHMVGGHSPLAHNE 422

Query: 526 LLCRFTFPEKPGALMKFLDAFSPRWNISLFHYRAQGDTGANVLVGIQVPPDEVVEFEGRA 585
           LL RF FPE+PGALMKF+ + SP WNIS+FHYR  G     ++VG+QVPP E+ E++   
Sbjct: 423 LLYRFEFPERPGALMKFVASMSPNWNISMFHYRNNGSDYGRIVVGMQVPPQEMEEWQAFL 482

Query: 586 DSLGYEYAMESLNEAYQLIM 605
           DSLGY+Y  ES N AY+L +
Sbjct: 483 DSLGYQYWDESQNPAYKLFL 502


Lambda     K      H
   0.318    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 718
Number of extensions: 28
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 503
Length adjustment: 36
Effective length of query: 570
Effective length of database: 467
Effective search space:   266190
Effective search space used:   266190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_011317547.1 AVA_RS03415 (threonine ammonia-lyase, biosynthetic)
to HMM TIGR01124 (ilvA: threonine ammonia-lyase, biosynthetic (EC 4.3.1.19))

Software error:

../bin/blast/fastacmd -i /tmp/list.31597.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31597.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.