Alignments for a candidate for hisD in Trichormus variabilis ATCC 29413

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate WP_011317709.1 AVA_RS04335 histidinol dehydrogenase

Query= BRENDA::Q8G2R2
         (430 letters)



>NCBI__GCF_000204075.1:WP_011317709.1
          Length = 431

 Score =  469 bits (1208), Expect = e-137
 Identities = 237/424 (55%), Positives = 312/424 (73%), Gaps = 2/424 (0%)

Query: 5   LRQTDPDFEQKFAAFLSGKREVSEDVDRAVREIVDRVRREGDSALLDYSRRFDRIDLEKT 64
           L+ TD +F  +F + +S +RE + DV   VR+I+  V+  GD+A+ +Y+ RFD       
Sbjct: 4   LKTTDQEFSTRFQSLVSDRREATVDVSGTVRDILAHVKAHGDAAVQEYTSRFDHYSPHSH 63

Query: 65  GIAVTEAEIDAAFDAAPASTVEALKLARDRIEKHHARQLPKDDRYTDALGVELGSRWTAI 124
            ++       AA     A    A++LA +RI   H +QLP+D  YTD +GV+LG  W A+
Sbjct: 64  HLSAAFIAEQAA--KCSAEVKAAIELAAERISSFHQKQLPQDIGYTDTVGVKLGLNWVAL 121

Query: 125 EAVGLYVPGGTASYPSSVLMNAMPAKVAGVDRIVMVVPAPDGNLNPLVLVAARLAGVSEI 184
             VG+YVPGG ASYPSSVLMNA+PAK+AGV+RIVM VP P G +NP VL AA++AGV+EI
Sbjct: 122 SQVGIYVPGGRASYPSSVLMNALPAKIAGVERIVMTVPMPHGEINPAVLAAAQVAGVTEI 181

Query: 185 YRVGGAQAIAALAYGTETIRPVAKIVGPGNAYVAAAKRIVFGTVGIDMIAGPSEVLIVAD 244
           Y +GGAQA+ ALAYGTETI PV KIVGPGNAYVA AKR VFGTVGID IAGPSE+L+VAD
Sbjct: 182 YSIGGAQAVGALAYGTETITPVDKIVGPGNAYVAEAKRQVFGTVGIDSIAGPSEILVVAD 241

Query: 245 KDNNPDWIAADLLAQAEHDTAAQSILMTNDEAFAHAVEEAVERQLHTLARTETASASWRD 304
           + NNP+WIA DLL+QAEHD +AQSIL+T+ E+FA  V  AVE+ L TL  T+ AS+SW++
Sbjct: 242 RQNNPEWIAWDLLSQAEHDPSAQSILITDSESFAQQVIGAVEQILTTLPTTKVASSSWQN 301

Query: 305 FGAVILVKDFEDAIPLANRIAAEHLEIAVADAEAFVPRIRNAGSIFIGGYTPEVIGDYVG 364
            GAVI+V+D  ++IPL N++A EH+E+ V + +    +I+ AGS+F+G YTPE IGDY+G
Sbjct: 302 HGAVIIVRDLAESIPLLNQLAPEHVELCVDNPQLLASQIKCAGSLFLGRYTPEAIGDYLG 361

Query: 365 GCNHVLPTARSARFSSGLSVLDYMKRTSLLKLGSEQLRALGPAAIEIARAEGLDAHAQSV 424
           G NHVLPT+RSARF+SGLSV D++KR + L+     L+A+G +A+ +A  EGL AHA SV
Sbjct: 362 GPNHVLPTSRSARFASGLSVYDFLKRITYLECNQAALQAIGQSAVTLAETEGLPAHAGSV 421

Query: 425 AIRL 428
           A+RL
Sbjct: 422 AVRL 425


Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 453
Number of extensions: 13
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 431
Length adjustment: 32
Effective length of query: 398
Effective length of database: 399
Effective search space:   158802
Effective search space used:   158802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_011317709.1 AVA_RS04335 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.30592.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30592.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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