Alignments for a candidate for aroG in Trichormus variabilis ATCC 29413

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate WP_011317715.1 AVA_RS04365 3-deoxy-7-phosphoheptulonate synthase

Query= BRENDA::Q9YEJ7
         (270 letters)



>NCBI__GCF_000204075.1:WP_011317715.1
          Length = 290

 Score =  262 bits (670), Expect = 5e-75
 Identities = 130/259 (50%), Positives = 179/259 (69%), Gaps = 1/259 (0%)

Query: 8   KLALKSEERRETVVEV-EGVRIGGGSKAVIAGPCSVESWEQVREAALAVKEAGAHMLRGG 66
           KL  +S    +T+V++ E V  GG    +I GPC+VES +Q+   A  ++ +    LRGG
Sbjct: 5   KLVSQSHPNHQTIVQISETVAFGGKELVIIGGPCTVESLQQMETVAQRLEGSSVQALRGG 64

Query: 67  AFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPVVTEVLDPRHVETVSRYADMLQIGARNM 126
            +KPRTSPY+FQG+G  GL +L +      +PVVTEV+    +E ++ + DMLQ+G+RNM
Sbjct: 65  VYKPRTSPYAFQGMGEAGLDVLAQVRSHYNMPVVTEVMSIAQIEAIATHVDMLQVGSRNM 124

Query: 127 QNFPLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRF 186
           QNF LL+ +G++GKP+LLKRG   T+EE + AAEY++  GN  VVL ERGIR+F+  TR 
Sbjct: 125 QNFDLLKALGQAGKPILLKRGLAATIEEFVMAAEYVVSHGNPDVVLCERGIRSFDNYTRN 184

Query: 187 TLDVAAVAVLKEATHLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHPNPEEALS 246
            LD+AAV  LK+ THLPVIVDPSH  G+R LV  LAKA +A GADGLI+E HP PE+++S
Sbjct: 185 VLDLAAVVALKQITHLPVIVDPSHAVGKRELVAPLAKAAVACGADGLIIECHPEPEKSVS 244

Query: 247 DAKQQLTPGEFARLMGELR 265
           DA+Q L+  +   L+  L+
Sbjct: 245 DARQALSLEDMVSLVDSLK 263


Lambda     K      H
   0.318    0.136    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 201
Number of extensions: 3
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 290
Length adjustment: 26
Effective length of query: 244
Effective length of database: 264
Effective search space:    64416
Effective search space used:    64416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)

Align candidate WP_011317715.1 AVA_RS04365 (3-deoxy-7-phosphoheptulonate synthase)
to HMM TIGR01361 (aroF: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.22089.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.22089.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.