Alignments for a candidate for lysA in Trichormus variabilis ATCC 29413

Align diaminopimelate decarboxylase subunit (EC 4.1.1.20) (characterized)
to candidate WP_011317766.1 AVA_RS04610 diaminopimelate decarboxylase

Query= metacyc::MONOMER-6601
         (439 letters)



>NCBI__GCF_000204075.1:WP_011317766.1
          Length = 464

 Score =  382 bits (982), Expect = e-110
 Identities = 198/426 (46%), Positives = 280/426 (65%), Gaps = 6/426 (1%)

Query: 6   TSRQNQHGHLEIGGVDALYLAEKYGTPLYVYDVALIRERAKSFKQAFISAGL-KAQVAYA 64
           T++ N  G+LEIGG D   L E++G+PLY+ D   +R   + ++  F      ++QV YA
Sbjct: 37  TAKANSQGNLEIGGCDVTTLVEQFGSPLYILDEETLRTACQQYRDGFQKYYPGESQVLYA 96

Query: 65  SKAFSSVAMIQLAEEEGLSLDVVSGGELYTAVAAGFPAERIHFHGNNKSREELRMALEHR 124
           SKA++ +A+  +A  EGL +DVVSGGELYTA+AAG    +I+ HGNNKSREEL +A+E  
Sbjct: 97  SKAWNCLAVCAIAGSEGLGIDVVSGGELYTALAAGVSPAKIYLHGNNKSREELILAIESG 156

Query: 125 IGCIVVDNFYEIALLEDLCKETGHSIDVLLRITPGVEAHTHDYITTGQEDSKFGFDLHNG 184
           +  IV DN+YE+  L  L   T   + ++LR+TPG+E HTH+YI TG  DSKFGFD ++ 
Sbjct: 157 V-TIVADNWYELRTLASLT-HTDQPVRIMLRLTPGIECHTHEYIRTGHLDSKFGFDPND- 213

Query: 185 QTERAIEQVLQSEHIQLLGVHCHIGSQIFDTAGFVLAAEKIFKKLDEWRDSYSFVSKVLN 244
                 E V Q  ++  +G+H HIGSQIF+       A  + + L +  + Y      LN
Sbjct: 214 -LAEVFEFVSQQPNLNCVGLHAHIGSQIFERQPHRDLAAVMVQWLRD-ANKYGLNVTELN 271

Query: 245 LGGGFGIRYTEDDEPLHATEYVEKIIEAVKENASRYGFDIPEIWIEPGRSLVGDAGTTLY 304
           +GGG GI+Y E D+P    E+V+ I E V+   +     +P++  EPGRSL+  +  T Y
Sbjct: 272 VGGGLGIKYVESDDPPSIDEWVKAICEVVQSACAAENLPLPKLLSEPGRSLIATSCVTAY 331

Query: 305 TVGSQKEVPGVRQYVAVDGGMNDNIRPALYQAKYEAAAANRIGEAHDKTVSIAGKCCESG 364
           TVGS K +P +R YV++DGGM+DN RP  YQ+ Y A  AN++  +H +TV+IAGK CESG
Sbjct: 332 TVGSSKTIPEIRTYVSIDGGMSDNPRPITYQSVYRAVIANKLSVSHTETVTIAGKHCESG 391

Query: 365 DMLIWDIDLPEVKEGDLLAVFCTGAYGYSMANNYNRIPRPAVVFVENGEAHLVVKRETYE 424
           D+LI +  LP+ + GD+L V  TGAY YSMA+NYNR+PRPA V V NGEA+L+++RETY+
Sbjct: 392 DILIKNAQLPKTEPGDILVVMATGAYNYSMASNYNRLPRPAAVVVANGEANLILQRETYQ 451

Query: 425 DIVKLD 430
           D+++ D
Sbjct: 452 DLIRQD 457


Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 532
Number of extensions: 24
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 464
Length adjustment: 33
Effective length of query: 406
Effective length of database: 431
Effective search space:   174986
Effective search space used:   174986
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_011317766.1 AVA_RS04610 (diaminopimelate decarboxylase)
to HMM TIGR01048 (lysA: diaminopimelate decarboxylase (EC 4.1.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.9560.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9560.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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