Alignments for a candidate for hisF in Trichormus variabilis ATCC 29413

Align Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 (characterized)
to candidate WP_011317857.1 AVA_RS05095 imidazole glycerol phosphate synthase subunit HisF

Query= SwissProt::Q7SIB9
         (252 letters)



>NCBI__GCF_000204075.1:WP_011317857.1
          Length = 257

 Score =  299 bits (765), Expect = 4e-86
 Identities = 157/254 (61%), Positives = 197/254 (77%), Gaps = 5/254 (1%)

Query: 3   LAKRIVPCLDVHAGRVVKGVNFVNLRDAGDPVEAARAYDEAGADELVFLDISATHEERAI 62
           L+KRI+PCLDV AGRVVKGVNFV+L+DAGDPVE A+ Y++AGADELVFLDI+ATHE+R  
Sbjct: 2   LSKRILPCLDVKAGRVVKGVNFVDLKDAGDPVELAKVYNDAGADELVFLDITATHEDRDT 61

Query: 63  LLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPELIRELADHFG 122
           ++DVV R AE+VFIPLTVGGG++SLE+ + LL +GADKVS+NSAAVR PELI   +D FG
Sbjct: 62  IIDVVYRTAEQVFIPLTVGGGIQSLENVKALLRAGADKVSINSAAVRDPELIDRASDRFG 121

Query: 123 AQAVVLAIDARWRGDFP----EVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDG 178
            Q +V+AIDAR R D      +V+V GGR  TGL A+ WA +  + GAGE+L+TSMD DG
Sbjct: 122 NQCIVVAIDARRRVDPSNPGWDVYVRGGRENTGLDALSWAKEVEKRGAGELLVTSMDADG 181

Query: 179 TKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAG-AEAALAASVFHFGEIPIPK 237
           T+ GYDL LTR +AE+V +PVIASGGAG  EH   A   G AEAAL AS+ H+G++ + +
Sbjct: 182 TQAGYDLELTRAIAESVEIPVIASGGAGNCEHIYTALTEGKAEAALLASLLHYGQLSVAE 241

Query: 238 LKRYLAEKGVHVRL 251
           +K YL +  V VRL
Sbjct: 242 IKNYLRDCQVPVRL 255


Lambda     K      H
   0.321    0.138    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 233
Number of extensions: 14
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 257
Length adjustment: 24
Effective length of query: 228
Effective length of database: 233
Effective search space:    53124
Effective search space used:    53124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_011317857.1 AVA_RS05095 (imidazole glycerol phosphate synthase subunit HisF)
to HMM TIGR00735 (hisF: imidazoleglycerol phosphate synthase, cyclase subunit)

Software error:

../bin/blast/fastacmd -i /tmp/list.3838.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3838.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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