Alignments for a candidate for cysE in Trichormus variabilis ATCC 29413

Align Serine acetyltransferase; SAT; EC 2.3.1.30 (characterized)
to candidate WP_011318481.1 AVA_RS08450 serine O-acetyltransferase

Query= SwissProt::Q06750
         (217 letters)



>NCBI__GCF_000204075.1:WP_011318481.1
          Length = 253

 Score =  223 bits (568), Expect = 3e-63
 Identities = 114/207 (55%), Positives = 148/207 (71%), Gaps = 8/207 (3%)

Query: 5   MLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHALYKRKFYFLARLISQVSRFF 64
           +L+ D   +F++DPAAR+  EV+  Y GL A+  HR+A+ LY+    F+ RLIS ++RF 
Sbjct: 4   ILRADFRIIFERDPAARNLLEVLFCYPGLQALLFHRVANWLYRLGLPFIPRLISHIARFL 63

Query: 65  TGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPTIKDD 124
           TGIEIHPGATIGR  FIDHGMGVVIGET  +G+   ++QGVTLGGTGKE GKRHPT+ ++
Sbjct: 64  TGIEIHPGATIGRGVFIDHGMGVVIGETAIVGDYALIYQGVTLGGTGKESGKRHPTLGEN 123

Query: 125 ALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVVVQNGKKVRRDLNHQD 184
            ++  GAKVLG++ +G   +IGAGSVVL DVP   TVVGIPGR+V ++G +V   L H +
Sbjct: 124 VVVGAGAKVLGNLQIGNNVRIGAGSVVLRDVPANCTVVGIPGRIVYRSGGRV-DPLEHNN 182

Query: 185 LPDPVA-------DRFKSLEQQILELK 204
           LPD  A       DR +SLEQQI  L+
Sbjct: 183 LPDSEAQAIRALVDRIESLEQQIQALQ 209


Lambda     K      H
   0.323    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 227
Number of extensions: 13
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 253
Length adjustment: 23
Effective length of query: 194
Effective length of database: 230
Effective search space:    44620
Effective search space used:    44620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)

Align candidate WP_011318481.1 AVA_RS08450 (serine O-acetyltransferase)
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.14785.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.14785.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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