Align Chorismate mutase AroH; EC 5.4.99.5 (characterized)
to candidate WP_011318501.1 AVA_RS08560 chorismate mutase
Query= SwissProt::Q84FH6
(122 letters)
>NCBI__GCF_000204075.1:WP_011318501.1
Length = 137
Score = 83.6 bits (205), Expect = 9e-22
Identities = 54/119 (45%), Positives = 74/119 (62%), Gaps = 7/119 (5%)
Query: 2 VRGIRGAITVEEDTPEAIHQATRELLLKMLEANGIQSYEELAAVIFTVTEDLTSAFPAEA 61
+R IRGA TV E+T EAI +A ELL ++ N +Q +++ +V F+VT DL + FPA
Sbjct: 5 LRAIRGATTVSENTVEAIREAVSELLDELEGRNQLQP-QDMISVTFSVTRDLDATFPAAI 63
Query: 62 AR-QIGMHRVPLLSAREVPVPGSLPRVIRVL--ALWNTDTPQDRVRHVYLREAVRLRPD 117
AR + G V +L +++ V GSL R IR L A T TP + H+YLREA +LRPD
Sbjct: 64 ARPRPGWDNVAMLDVQQMHVEGSLQRCIRFLIHAYLPTSTP---INHIYLREARKLRPD 119
Lambda K H
0.320 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 137
Length adjustment: 14
Effective length of query: 108
Effective length of database: 123
Effective search space: 13284
Effective search space used: 13284
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 41 (20.4 bits)
Align candidate WP_011318501.1 AVA_RS08560 (chorismate mutase)
to HMM TIGR01796 (aroH: chorismate mutase (EC 5.4.99.5))
../bin/blast/fastacmd -i /tmp/list.21084.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21084.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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