Align Carbamoyl-phosphate synthase large chain, chloroplastic; Carbamoyl-phosphate synthetase ammonia chain; Protein VENOSA 3; EC 6.3.5.5 (characterized)
to candidate WP_011318692.1 AVA_RS09555 carbamoyl-phosphate synthase large subunit
Query= SwissProt::Q42601
(1187 letters)
>NCBI__GCF_000204075.1:WP_011318692.1
Length = 1097
Score = 1471 bits (3809), Expect = 0.0
Identities = 731/1093 (66%), Positives = 896/1093 (81%), Gaps = 12/1093 (1%)
Query: 94 KRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALREEGYEVILINSNPATIMTDPETAN 153
+R D++KI++LG+GPIVIGQACEFDYSGTQACKALREEGYEV+L+NSNPATIMTDPETA+
Sbjct: 3 RRQDIQKILLLGSGPIVIGQACEFDYSGTQACKALREEGYEVVLVNSNPATIMTDPETAD 62
Query: 154 RTYIAPMTPELVEQVIEKERPDALLPTMGGQTALNLAVALAESGALEKYGVELIGAKLGA 213
RTYI P+TPELVE+VI +ERPDALLPTMGGQTALN+AVALA++G L++Y VELIGAKL A
Sbjct: 63 RTYIEPLTPELVEKVIARERPDALLPTMGGQTALNIAVALAKNGVLDQYNVELIGAKLPA 122
Query: 214 IKKAEDRELFKDAMKNIGLKTPPSGIGTTLDECFDIAEKIGEFPLIIRPAFTLGGTGGGI 273
I+KAEDR+LF +AM IG+K PSG ++LDE IA +IG +PLIIRPAFT+GGTGGGI
Sbjct: 123 IEKAEDRKLFNEAMDKIGVKVCPSGTASSLDEAKAIARRIGTYPLIIRPAFTMGGTGGGI 182
Query: 274 AYNKEEFESICKSGLAASATSQVLVEKSLLGWKEYELEVMRDLADNVVIICSIENIDPMG 333
AYN+EEFE + + G+ AS SQ+L+++SLLGWKEYELEVMRDLADNVVIICSIENIDPMG
Sbjct: 183 AYNQEEFEEMAQVGIDASPVSQILIDQSLLGWKEYELEVMRDLADNVVIICSIENIDPMG 242
Query: 334 VHTGDSITVAPAQTLTDREYQRLRDYSIAIIREIGVECGGSNVQFAVNPVDGEVMIIEMN 393
+HTGDSITVAPAQTLTD+EYQRLRD +I IIREIGVE GGSN+QFAVNPV+G+V++IEMN
Sbjct: 243 IHTGDSITVAPAQTLTDKEYQRLRDMAIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMN 302
Query: 394 PRVSRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDITRKTPASFEPSIDYVVTKIPRF 453
PRVSRSSAL+SKATGFPIAKMAAKL+VGYTLD+I NDIT+KTPASFEP+IDYVVTK+PRF
Sbjct: 303 PRVSRSSALSSKATGFPIAKMAAKLAVGYTLDEIRNDITKKTPASFEPTIDYVVTKVPRF 362
Query: 454 AFEKFPGSQPLLTTQMKSVGESMALGRTFQESFQKALRSLECGFSGWGCAKIKELDWDWD 513
AFEKFPGS+P+LTTQMKSVGE+MA+GRTF ESFQKALRSLE G +GWGC K ++L +
Sbjct: 363 AFEKFPGSEPVLTTQMKSVGEAMAIGRTFNESFQKALRSLETGRAGWGCDKAEKLP-SGE 421
Query: 514 QLKYSLRVPNPDRIHAIYAAMKKGMKIDEIYELSMVDKWFLTQLKELVDVEQYLMSGTLS 573
Q++ LR PNPDRI A+ A++ GM +EIYEL+ +D WFL ++++L++VE++L L
Sbjct: 422 QIRAQLRTPNPDRIFAVRHALQLGMSPEEIYELTAIDPWFLDKMQQLLEVEKFLKRTPLK 481
Query: 574 EITKEDLYEVKKRGFSDKQIAFATKTTEEEVRTKRISLGVVPSYKRVDTCAAEFEAHTPY 633
++T+E +Y VK+ G+SD+QIAFATKTTE+EVR R LGV P YK VDTCAAEFEA TPY
Sbjct: 482 QLTREQMYAVKRDGYSDRQIAFATKTTEDEVRAYRKELGVTPVYKTVDTCAAEFEAFTPY 541
Query: 634 MYSSYDVECESAPNNKKKVLILGGGPNRIGQGIEFDYCCCHTSFALQDAGYETIMLNSNP 693
YS+Y+ E E P +K KV+ILGGGPNRIGQGIEFDYCCCH ++AL+ AGYETIM+NSNP
Sbjct: 542 YYSTYEEETEVIPASKPKVMILGGGPNRIGQGIEFDYCCCHAAYALKGAGYETIMVNSNP 601
Query: 694 ETVSTDYDTSDRLYFEPLTIEDVLNVIDLEKPDGIIVQFGGQTPLKLALPIKHYLDKHMP 753
ETVSTDYDTSDRLYFEPLT EDVLN+I+ E P GIIVQFGGQTPLKLALP++ YL +
Sbjct: 602 ETVSTDYDTSDRLYFEPLTKEDVLNIIEAENPVGIIVQFGGQTPLKLALPLQEYLRQVGN 661
Query: 754 MSL------SGAGPVRIWGTSPDSIDAAEDRERFNAILDELKIEQPKGGIAKSEADALAI 807
SL +IWGTSPDSID+AEDRERF IL +L I QP GIA+S DAL +
Sbjct: 662 GSLVIGNGNEETAITKIWGTSPDSIDSAEDRERFEKILQQLNISQPPNGIARSYEDALIV 721
Query: 808 AKEVGYPVVVRPSYVLGGRAMEIVYDDSRLITYLENAVQVDPERPVLVDKYLSDAIEIDV 867
AK +GYPVVVRPSYVLGGRAMEIVY D+ L Y+ AVQV+PE P+L+DK+L +AIE+DV
Sbjct: 722 AKRIGYPVVVRPSYVLGGRAMEIVYSDAELERYMTFAVQVEPEHPILIDKFLENAIEVDV 781
Query: 868 DTLTDSYGNVVIGGIMEHIEQAGVHSGDSACMLPTQTIPASCLQTIRTWTTKLAKKLNVC 927
D + D G VVIGGIMEHIEQAG+HSGDSAC LP+ ++P + L IR+WT +LA+ L+V
Sbjct: 782 DAIADHTGRVVIGGIMEHIEQAGIHSGDSACSLPSISLPPAVLNQIRSWTVQLAQALSVV 841
Query: 928 GLMNCQYAI----TTSGDVFLLEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLKDLN 983
GLMN Q+A+ + S V++LEANPRASRTVPFVSKA G LAK A+L+MSGK+L++LN
Sbjct: 842 GLMNIQFAVVGASSYSPQVYILEANPRASRTVPFVSKATGISLAKLASLIMSGKTLEELN 901
Query: 984 FEKEVIPKHVSVKEAVFPFEKFQGCDVILGPEMRSTGEVMSISSEFSSAFAMAQIAAGQK 1043
F +EVIP H++VKEAV PF KF G D ILGPEMRSTGEVM I S+F AFA A++ AG++
Sbjct: 902 FTQEVIPSHIAVKEAVLPFNKFPGTDTILGPEMRSTGEVMGIDSDFGRAFAKAELGAGER 961
Query: 1044 LPLSGTVFLSLNDMTKPHLEKIAVSFLELGFKIVATSGTAHFLELKGIPVERVLKLHEGR 1103
LPL+GTVF+S++D K + F++LGFK++AT GT L G+ VE VLKLHEGR
Sbjct: 962 LPLTGTVFVSMSDRDKSAAVSVVREFIDLGFKVMATFGTRRVLLENGLNVELVLKLHEGR 1021
Query: 1104 PHAADMVANGQIHLMLITSSGDALDQKDGRQLRQMALAYKVPVITTVAGALATAEGIKSL 1163
PH D + N +I L++ T SG+ Q D R +R+ LAYK+P+ITT+AGA AT I+S+
Sbjct: 1022 PHVIDAIKNQKIQLIINTPSGEEA-QTDARLIRRTGLAYKIPIITTIAGAKATVAAIRSM 1080
Query: 1164 KSSAIKMTALQDF 1176
+++ + + +Q++
Sbjct: 1081 QNTTLDVKTIQEY 1093
Lambda K H
0.317 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3218
Number of extensions: 135
Number of successful extensions: 15
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 1187
Length of database: 1097
Length adjustment: 46
Effective length of query: 1141
Effective length of database: 1051
Effective search space: 1199191
Effective search space used: 1199191
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Align candidate WP_011318692.1 AVA_RS09555 (carbamoyl-phosphate synthase large subunit)
to HMM TIGR01369 (carB: carbamoyl-phosphate synthase, large subunit (EC 6.3.5.5))
../bin/blast/fastacmd -i /tmp/list.29609.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.29609.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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