Alignments for a candidate for argG in Trichormus variabilis ATCC 29413

Align Argininosuccinate synthase; Citrulline--aspartate ligase; EC 6.3.4.5 (characterized)
to candidate WP_011318860.1 AVA_RS10450 argininosuccinate synthase

Query= SwissProt::P59846
         (400 letters)



>NCBI__GCF_000204075.1:WP_011318860.1
          Length = 400

 Score =  392 bits (1008), Expect = e-114
 Identities = 193/395 (48%), Positives = 270/395 (68%), Gaps = 2/395 (0%)

Query: 2   KIVLAYSGGLDTSIILKWLKETYRAE-VIAFTADIGQGEEVEEAREKALRTGASKAIALD 60
           K+VLAYSGG+DTS+ + +LK+ +  E VI   AD+GQG+E+E  REKAL++GAS+++  D
Sbjct: 6   KVVLAYSGGVDTSVCIPYLKQEWGVEEVITLAADLGQGDELEPIREKALKSGASESLVAD 65

Query: 61  LKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGN 120
           +KE F++D+ FP ++A A+YE  Y LGT++ARPLIAK LV  AE+ GA+AIAHG TGKGN
Sbjct: 66  VKESFIKDYAFPAIQANALYENRYPLGTALARPLIAKILVEAAEKYGADAIAHGCTGKGN 125

Query: 121 DQVRFELTAYALKPDIKVIAPWREWSFQGRKEMIAYAEAHGIPVPVTQEKPYSMDANLLH 180
           DQVRF+++  AL P +K++AP REW    R+  IAY E  GIP PV +  PYS+D NLL 
Sbjct: 126 DQVRFDVSCTALNPKLKILAPAREWGMS-REATIAYGEKFGIPSPVKKSSPYSIDKNLLG 184

Query: 181 ISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERLSPAALLQ 240
            S E G LEDP  EPP+ ++ MT+   + P+ PEY+E+ F +G P  +NG    P AL+Q
Sbjct: 185 RSIEAGALEDPKFEPPEEIYEMTKAIADTPNEPEYIEIGFTQGLPTTINGTPKDPVALIQ 244

Query: 241 RLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDM 300
            LN++ G HGVGR+D++ENR VG+KSR +YE+P   +L  A R +ESLTL  +V H +  
Sbjct: 245 ELNQLVGSHGVGRIDMIENRLVGIKSREIYESPAMLVLIQAHRDLESLTLTADVSHYKRG 304

Query: 301 LSPKYAELVYYGFWYAPEREALQAYFDHVARSVTGVARLKLYKGNVYVVGRKAPKSLYRQ 360
           +   Y+++VY G WY+P + AL A+       V+G+ R+KL+KGN  +VGR +  SLY  
Sbjct: 305 IEETYSQIVYNGLWYSPLKAALDAFIQKTQERVSGIVRVKLFKGNATIVGRWSDSSLYTP 364

Query: 361 DLVSFDEAGGYDQKDAEGFIKIQALRLRVRALVER 395
           DL ++     +D K AEGFI +  L  R+ A  +R
Sbjct: 365 DLATYGAEDQFDHKAAEGFIYVWGLPTRIWAQQDR 399


Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 434
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 400
Length adjustment: 31
Effective length of query: 369
Effective length of database: 369
Effective search space:   136161
Effective search space used:   136161
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)

Align candidate WP_011318860.1 AVA_RS10450 (argininosuccinate synthase)
to HMM TIGR00032 (argG: argininosuccinate synthase (EC 6.3.4.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.31112.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.31112.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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