Alignments for a candidate for trpA in Trichormus variabilis ATCC 29413

Align Tryptophan synthase alpha chain; EC 4.2.1.20 (characterized, see rationale)
to candidate WP_011318873.1 AVA_RS10525 tryptophan synthase subunit alpha

Query= uniprot:M4NLA4
         (266 letters)



>NCBI__GCF_000204075.1:WP_011318873.1
          Length = 266

 Score =  176 bits (445), Expect = 6e-49
 Identities = 107/265 (40%), Positives = 146/265 (55%), Gaps = 4/265 (1%)

Query: 1   MSRIDRRFAALKAANRTGLIPFVTAGDPSPEHMVALMHALVDAGADLIELGVPFSDPMAD 60
           M+ I  RF  LK      LIPF+TAGDP  E   A +  L   GAD+IELG+P+SDP+AD
Sbjct: 1   MTAISDRFETLKQNQECALIPFITAGDPDLETTAAALKILDSNGADIIELGIPYSDPLAD 60

Query: 61  GPVIQHASERAIAKGVGLADVLGWVAAFRQHDADTPIVLMGYLNPIETHGYARFAGEAVQ 120
           GPVIQ A+ RA+  G  L  VL  +          PIVL  Y N I   G   F  +   
Sbjct: 61  GPVIQAAATRALQNGTKLESVLEMLKV-TTPSLQAPIVLFTYYNSILHRGIDNFLEQVAA 119

Query: 121 AGVDGVLLVDCPLEESA-VLQPLRDAGLQRILLAAPTTEPSRMAQLCGSAEGFLYYVSFA 179
           AGV G+++ D PLEE+A +L+P  + G+  ILL APT+   R+  +  S++GF+Y VS  
Sbjct: 120 AGVAGLVVPDLPLEEAAGLLKPATERGIDLILLIAPTSSSERIEAIARSSQGFIYLVSVT 179

Query: 180 GITGAAHLSTGDIAARVADVRARAKAPVAVGFGIRDAASAKAIAGF-ADAVVIGSALVDR 238
           G+TG      G +   +  VR     P+ VGFGI   A A  +  + ADA ++GSA V R
Sbjct: 180 GVTGMRSQVEGRVLDLLQKVRQVTDKPLGVGFGISQPAQATQVRDWGADAAIVGSAFVQR 239

Query: 239 LAGATDAGEITRRTQAFLAPIRAAL 263
           LA  T A  ++   + F   ++AA+
Sbjct: 240 LATGTPAEGLSAIAE-FCQSLKAAI 263


Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 201
Number of extensions: 10
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 266
Length adjustment: 25
Effective length of query: 241
Effective length of database: 241
Effective search space:    58081
Effective search space used:    58081
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_011318873.1 AVA_RS10525 (tryptophan synthase subunit alpha)
to HMM TIGR00262 (trpA: tryptophan synthase, alpha subunit (EC 4.2.1.20))

Software error:

../bin/blast/fastacmd -i /tmp/list.6190.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6190.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.