Align LL-diaminopimelate aminotransferase (EC 2.6.1.83) (characterized)
to candidate WP_011319138.1 AVA_RS11905 LL-diaminopimelate aminotransferase
Query= BRENDA::Q3MAL4
(411 letters)
>NCBI__GCF_000204075.1:WP_011319138.1
Length = 411
Score = 828 bits (2138), Expect = 0.0
Identities = 411/411 (100%), Positives = 411/411 (100%)
Query: 1 MATINDNYLKLKAGYLFPEIARRVNAFAEANPDAKIIRLGIGDVTEPLPEACRTAMIQAV 60
MATINDNYLKLKAGYLFPEIARRVNAFAEANPDAKIIRLGIGDVTEPLPEACRTAMIQAV
Sbjct: 1 MATINDNYLKLKAGYLFPEIARRVNAFAEANPDAKIIRLGIGDVTEPLPEACRTAMIQAV 60
Query: 61 EEMGDRSSFKGYGPEQGYAWLREKIATQDFQARGADVDASEIFISDGSKCDTGNILDIFG 120
EEMGDRSSFKGYGPEQGYAWLREKIATQDFQARGADVDASEIFISDGSKCDTGNILDIFG
Sbjct: 61 EEMGDRSSFKGYGPEQGYAWLREKIATQDFQARGADVDASEIFISDGSKCDTGNILDIFG 120
Query: 121 DNNIIAVTDPVYPVYVDTNVMAGHTGVANDKGEFEGLVYLPVTAENNFTAEIPSQKVDLI 180
DNNIIAVTDPVYPVYVDTNVMAGHTGVANDKGEFEGLVYLPVTAENNFTAEIPSQKVDLI
Sbjct: 121 DNNIIAVTDPVYPVYVDTNVMAGHTGVANDKGEFEGLVYLPVTAENNFTAEIPSQKVDLI 180
Query: 181 YLCFPNNPTGATATKEHLQAWVDYAKAHNSIIFFDAAYESYITDPSLPHSIYEIEGAREV 240
YLCFPNNPTGATATKEHLQAWVDYAKAHNSIIFFDAAYESYITDPSLPHSIYEIEGAREV
Sbjct: 181 YLCFPNNPTGATATKEHLQAWVDYAKAHNSIIFFDAAYESYITDPSLPHSIYEIEGAREV 240
Query: 241 AIEFRSFSKNAGFTGTRCALTVVPKTLKAKAADGSDVELWKLWNRRQSTKFNGVSYIVQR 300
AIEFRSFSKNAGFTGTRCALTVVPKTLKAKAADGSDVELWKLWNRRQSTKFNGVSYIVQR
Sbjct: 241 AIEFRSFSKNAGFTGTRCALTVVPKTLKAKAADGSDVELWKLWNRRQSTKFNGVSYIVQR 300
Query: 301 GAEAVYSEAGQAQVKALVSFYLDNAKIIREKLTAAGLSVYGGVNAPYVWVKTPNGLSSWD 360
GAEAVYSEAGQAQVKALVSFYLDNAKIIREKLTAAGLSVYGGVNAPYVWVKTPNGLSSWD
Sbjct: 301 GAEAVYSEAGQAQVKALVSFYLDNAKIIREKLTAAGLSVYGGVNAPYVWVKTPNGLSSWD 360
Query: 361 FFDKLLQTVNVVGTPGSGFGAAGEGYFRISAFNSRENVEEAMQRITEKFKL 411
FFDKLLQTVNVVGTPGSGFGAAGEGYFRISAFNSRENVEEAMQRITEKFKL
Sbjct: 361 FFDKLLQTVNVVGTPGSGFGAAGEGYFRISAFNSRENVEEAMQRITEKFKL 411
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 745
Number of extensions: 21
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 411
Length adjustment: 31
Effective length of query: 380
Effective length of database: 380
Effective search space: 144400
Effective search space used: 144400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)
Align candidate WP_011319138.1 AVA_RS11905 (LL-diaminopimelate aminotransferase)
to HMM TIGR03542 (LL-diaminopimelate aminotransferase (EC 2.6.1.83))
../bin/blast/fastacmd -i /tmp/list.24335.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.24335.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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