Alignments for a candidate for ilvI in Trichormus variabilis ATCC 29413

Align acetolactate synthase (subunit 2/2) (EC 2.2.1.6) (characterized)
to candidate WP_011319511.1 AVA_RS13955 biosynthetic-type acetolactate synthase large subunit

Query= BRENDA::P9WG41
         (618 letters)



>NCBI__GCF_000204075.1:WP_011319511.1
          Length = 632

 Score =  549 bits (1415), Expect = e-160
 Identities = 304/596 (51%), Positives = 391/596 (65%), Gaps = 16/596 (2%)

Query: 14  PEPHSAANEPKHPAA--RPKHVAL-QQLTGAQAVIRSLEELGVDVIFGIPGGAVLPVYDP 70
           P P S +   KH  +   P  V   Q++TG  A++ SL   GV+ IFG PGGA+LP+YD 
Sbjct: 6   PSPTSPSQTEKHTQSVNSPSVVVTPQRVTGGFALLDSLLRHGVEYIFGYPGGAILPIYDD 65

Query: 71  LFDSK---KLRHVLVRHEQGAGHAASGYAHVTGRVGVCMATSGPGATNLVTPLADAQMDS 127
           L+  +    L+H+LVRHEQGA HAA GYA  TG+VGVC  TSGPGATNLVT +A A MDS
Sbjct: 66  LYKVEATGSLKHILVRHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAYMDS 125

Query: 128 IPVVAITGQVGRGLIGTDAFQEADISGITMPITKHNFLVRSGDDIPRVLAEAFHIAASGR 187
           IP+V +TGQV R +IGTDAFQE DI GIT+PI KH+++VR   D+ R++AEAFHIA++GR
Sbjct: 126 IPMVIVTGQVPRKMIGTDAFQETDIYGITLPIVKHSYVVRDPQDMARIVAEAFHIASTGR 185

Query: 188 PGAVLVDIPKDVLQGQCTF--SWPPRMELPGYKPNTKPHSRQVREAAKLIAAARKPVLYV 245
           PG VL+D+PKDV   Q  +    P  ++L GY+P  K + RQ+  A +LI  +R+P+LYV
Sbjct: 186 PGPVLIDVPKDVAFEQFDYVPVEPGSIKLRGYRPTVKGNPRQINAAIELIRESRRPLLYV 245

Query: 246 GGGVIRGEATEQLRELAELTGIPVVTTLMARGAFPDSHRQNLGMPGMHGTVAAVAALQRS 305
           GGG I   A  +++ELAEL  IPV TTLM  GAF + H  +LGM GMHGT  A  A+   
Sbjct: 246 GGGAIASGAHAEIQELAELFNIPVTTTLMGIGAFDEHHPLSLGMLGMHGTAYANFAVTDC 305

Query: 306 DLLIALGTRFDDRVTGKLDSFAPEAKVIHADIDPAEIGKNRHADVPIVGDVKAVITELIA 365
           DLLI +G RFDDRVTGKLD FA  AKVIH DIDPAE+GKNR  +VPIVGDV+ V+ +L+ 
Sbjct: 306 DLLICVGARFDDRVTGKLDEFASRAKVIHIDIDPAEVGKNRIPEVPIVGDVRKVLLDLLR 365

Query: 366 MLRHHHIPGT-IEMADWWAYLNGVRKTYPLSYGPQSDGSLSPEYVIEKLGEIAGPDAVFV 424
             +      T  +  +W   +N  R+ YPL   PQ   S+ P+ VI ++G  A P A + 
Sbjct: 366 RCKQTGAKNTPNQNQEWLNLINRWREDYPLVI-PQHPDSIPPQEVIVEVGSQA-PHAFYT 423

Query: 425 AGVGQHQMWAAQFIRYEKPRSWLNSGGLGTMGFAIPAAMGAKIALPGTEVWAIDGDGCFQ 484
             VGQHQMWAAQF++   PR W++S GLGTMGF +PAA+GAK+A P  +V  I GD  FQ
Sbjct: 424 TDVGQHQMWAAQFLK-NGPRRWISSAGLGTMGFGLPAAIGAKVAFPDEQVICISGDASFQ 482

Query: 485 MTNQELATCAVEGIPVKVALINNGNLGMVRQWQSLFYAERYSQTDLATHSHRIPDFVKLA 544
           M  QEL T +  GI VK  ++NNG  GMVRQWQ  F+ ERYS +++      +PD   LA
Sbjct: 483 MCLQELGTASQYGINVKTVILNNGWQGMVRQWQQAFHGERYSCSNMEV---GMPDVELLA 539

Query: 545 EALGCVGLRCEREEDVVDVINQARAINDCPVVIDFIVGADAQVWPMVAAGTSNDEI 600
           +A G  G+   + E + D I Q  A  D PV++D  V  D   +PMVA G SN ++
Sbjct: 540 KAYGIKGIVVTQREQLKDAIAQMLAY-DGPVILDVRVTKDENCYPMVAPGKSNAQM 594


Lambda     K      H
   0.319    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 1155
Number of extensions: 61
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 632
Length adjustment: 37
Effective length of query: 581
Effective length of database: 595
Effective search space:   345695
Effective search space used:   345695
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)

Align candidate WP_011319511.1 AVA_RS13955 (biosynthetic-type acetolactate synthase large subunit)
to HMM TIGR00118 (ilvB: acetolactate synthase, large subunit, biosynthetic type (EC 2.2.1.6))

Software error:

../bin/blast/fastacmd -i /tmp/list.21957.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.21957.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.