Alignments for a candidate for proC in Trichormus variabilis ATCC 29413

Align Pyrroline-5-carboxylate reductase; P5C reductase; P5CR; PCA reductase; EC 1.5.1.2 (characterized)
to candidate WP_011319649.1 AVA_RS14680 pyrroline-5-carboxylate reductase

Query= SwissProt::Q9HH99
         (270 letters)



>NCBI__GCF_000204075.1:WP_011319649.1
          Length = 270

 Score =  213 bits (542), Expect = 3e-60
 Identities = 126/268 (47%), Positives = 166/268 (61%), Gaps = 4/268 (1%)

Query: 5   KIGFIGAGKMGSALMQGTIKAGIVTPENIGASDVYEPFLKDLQAKLGIRVSTDNAVIVRE 64
           K G IG G MG AL+   I  GI  P  +  S+        LQ K  + V+TDN+++  +
Sbjct: 4   KFGLIGGGVMGEALLSRLIARGIYQPSEVIVSEPQTARQAFLQQKYHVGVTTDNSLVFTQ 63

Query: 65  S-DILILAVKPQTLSSVLSNLKNEITSEK--LVISIAAGVPLSTYEDALLEGTRVVRVMP 121
           + D++ LAVKPQ  S++   L + + ++   LV+SI AGV LS  E A  +   V+R MP
Sbjct: 64  AQDVVFLAVKPQVFSAIAQELADTVFTDHSPLVVSILAGVSLSQLEAAFPQSP-VIRAMP 122

Query: 122 NIAATVSEAASGIAPGKNATPEDLKAALEIFSAVGTAVQVPESLMDAVTGLSGSGPAFIF 181
           N  ATV    + I  G     +  K A +IFSAVG  V+V ESLMDAVTGLSGSGPA++ 
Sbjct: 123 NTPATVGAGMTAICSGAYTYAQHQKLAQQIFSAVGEVVEVSESLMDAVTGLSGSGPAYVA 182

Query: 182 PVIEAMADGAVLEGMDRKSALTLAAQTVLGAAKMALETGMHPGELKDMVTSPAGTTIQGI 241
            ++EA+ADG V  G+ R  A  LA QTVLG A++  E+ +HP ELKD VTSP GTTI GI
Sbjct: 183 LLVEALADGGVASGLPRGIANQLALQTVLGTAQLLHESKLHPAELKDRVTSPGGTTIAGI 242

Query: 242 HSLEEAGIRAAFMNAVIRASERSKELGK 269
             LE+AG R+A + AV  A+ RS+ELGK
Sbjct: 243 AQLEKAGFRSALIEAVKAATWRSQELGK 270


Lambda     K      H
   0.313    0.130    0.343 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 183
Number of extensions: 12
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 270
Length adjustment: 25
Effective length of query: 245
Effective length of database: 245
Effective search space:    60025
Effective search space used:    60025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)

Align candidate WP_011319649.1 AVA_RS14680 (pyrroline-5-carboxylate reductase)
to HMM TIGR00112 (proC: pyrroline-5-carboxylate reductase (EC 1.5.1.2))

Software error:

../bin/blast/fastacmd -i /tmp/list.27168.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27168.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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