Alignments for a candidate for leuB in Trichormus variabilis ATCC 29413

Align 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (characterized)
to candidate WP_011319729.1 AVA_RS15110 3-isopropylmalate dehydrogenase

Query= BRENDA::Q00412
         (355 letters)



>NCBI__GCF_000204075.1:WP_011319729.1
          Length = 362

 Score =  548 bits (1413), Expect = e-161
 Identities = 277/352 (78%), Positives = 306/352 (86%)

Query: 1   MTQNYRITLLSGDGIGPEIMAVAVDVLKAVGKQLDLNFEFKEALMGGVAIDATGEPLPEE 60
           MTQNYRITLL GDGIGPEIMAVAVDVLK VG+Q D+ F+F+EAL+GG AIDATGEPLP  
Sbjct: 1   MTQNYRITLLPGDGIGPEIMAVAVDVLKVVGQQFDIQFDFQEALIGGAAIDATGEPLPSA 60

Query: 61  SLQACRDSDAVLLAAIGGYKWDNLPRPERPETGLLALRAGLGLFANRARLLFCPHVLDAS 120
           +L  CR SDAVLLAAIGGYKWD+LP  +RPE GLL LRAGL LFAN       P ++DAS
Sbjct: 61  TLDTCRQSDAVLLAAIGGYKWDSLPPHQRPEGGLLGLRAGLELFANLRPAQILPQLIDAS 120

Query: 121 SLKREVVEGVDIMVVRELTGGIYFGQPKGIFETETGKNEGSNTMAYGESEIDRIGRVGFE 180
           +LKREVVEGVDIMVVRELTGGIYFG+P+GIF TETG+  G NTM Y ESEIDRIGR+ FE
Sbjct: 121 TLKREVVEGVDIMVVRELTGGIYFGKPRGIFTTETGEKRGVNTMVYTESEIDRIGRIAFE 180

Query: 181 TAKKRQGRLCSVDKANVLDVSQLWRDRIMALAADYPEVELSHLYVDNAAMQLVRWPKQFD 240
           TA+KR+G+LCSVDKANVLDVSQLWRDRI  L+ +YP+VELSHLYVDNAAMQLVR PKQFD
Sbjct: 181 TARKRRGKLCSVDKANVLDVSQLWRDRITKLSQEYPDVELSHLYVDNAAMQLVRAPKQFD 240

Query: 241 TIVTGNLFGDILSDAAAMLTGSIGMLPSASLGASGPGVFEPVHGSAPDIAGQDKANPLAQ 300
           TIVTGNLFGDILSDAAAMLTGSIGMLPSASLGASGPGVFEPVHGSAPDIAG DKANPLAQ
Sbjct: 241 TIVTGNLFGDILSDAAAMLTGSIGMLPSASLGASGPGVFEPVHGSAPDIAGLDKANPLAQ 300

Query: 301 VLSAAMMLRYGLDEPAASDPVEKAVLKVLDWGYPTGDIMSEGMKAVGCRKWG 352
           VLSAAMMLRY L++P A+D +E+AVL+VL+ G  TGDIMS GM  +GCR  G
Sbjct: 301 VLSAAMMLRYALNQPQAADKIEQAVLQVLEQGDRTGDIMSVGMNLLGCRAMG 352


Lambda     K      H
   0.318    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 525
Number of extensions: 18
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 362
Length adjustment: 29
Effective length of query: 326
Effective length of database: 333
Effective search space:   108558
Effective search space used:   108558
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_011319729.1 AVA_RS15110 (3-isopropylmalate dehydrogenase)
to HMM TIGR00169 (leuB: 3-isopropylmalate dehydrogenase (EC 1.1.1.85))

Software error:

../bin/blast/fastacmd -i /tmp/list.17518.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.17518.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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