Alignments for a candidate for cimA in Trichormus variabilis ATCC 29413

Align (R)-citramalate synthase; EC 2.3.3.21 (uncharacterized)
to candidate WP_011319948.1 AVA_RS16285 citramalate synthase

Query= curated2:P74269
         (547 letters)



>NCBI__GCF_000204075.1:WP_011319948.1
          Length = 577

 Score =  753 bits (1945), Expect = 0.0
 Identities = 384/560 (68%), Positives = 431/560 (76%), Gaps = 36/560 (6%)

Query: 8   LWLYDTTLRDGAQREGISLSLTDKLTIARRLDQLGIPFIEGGWPGANPKDVQFFWQLQEE 67
           +WLYDTTLRDG QREG+S+S  DKL IA RLDQLGIPFIEGGWPGANPKDVQFFWQLQE+
Sbjct: 9   IWLYDTTLRDGTQREGLSISTEDKLRIAHRLDQLGIPFIEGGWPGANPKDVQFFWQLQED 68

Query: 68  PLEQAEIVAFCSTRRPHKAVETDKMLQAILSAGTRWVTIFGKSWDLHVLEGLQTSLAENL 127
           PL+ ++IVAFCSTRRPH     + MLQ IL+AG+ WVTIFGKSWDLHV  GL+T+L ENL
Sbjct: 69  PLKLSQIVAFCSTRRPHTHAADEPMLQDILAAGSSWVTIFGKSWDLHVTTGLKTTLEENL 128

Query: 128 AMISDTIAYLRSQGRRVIYDAEHWFDGYRANPDYALATLATAQQAGAEWLVMCDTNGGTL 187
           AMI DTI + RSQGRRVIYDAEHWFDGY+ N DYAL TL  A  AGAEWLV+CDTNGGTL
Sbjct: 129 AMIRDTIEFFRSQGRRVIYDAEHWFDGYKHNRDYALQTLKAAMAAGAEWLVLCDTNGGTL 188

Query: 188 PGQISEI---TTKVRRSLG-LDGQSDRQ-----------------------------PQL 214
           P ++S+I     KV R  G ++ + D+                              PQ+
Sbjct: 189 PHEVSQIVQDVVKVTRDWGRINSKLDQSGQVVSEEVEKSTNSLPNTQYPIPNLPFPIPQI 248

Query: 215 GIHAHNDSGTAVANSLLAVEAGATMVQGTINGYGERCGNANLCTLIPNLQLKLDYDCIEP 274
           GIH HNDS  AVAN+L AV AGATMVQGTINGYGERCGNANLC+LIPNLQLKL Y CI  
Sbjct: 249 GIHTHNDSDMAVANALAAVMAGATMVQGTINGYGERCGNANLCSLIPNLQLKLGYSCITE 308

Query: 275 EKLAHLTSTSRLISEIVNLAPDDHAPFVGRSAFAHKGGIHVSAVQRNPFTYEHIAPNLVG 334
            +L  L   SR +SE+VNLAPD+HAPFVGRSAFAHKGGIHVSAV+RNP TYEHI P  VG
Sbjct: 309 HQLGQLAEASRFVSEVVNLAPDEHAPFVGRSAFAHKGGIHVSAVERNPLTYEHIQPEQVG 368

Query: 335 NERRIVVSEQAGLSNVLSKAELFGIALDRQNPACRTILATLKDLEQQGYQFEAAEASFEL 394
           N RRIV+SEQ+G+SNVL+KA  FGI LD+Q P  + IL  LK+LE +GYQFEAAEASF L
Sbjct: 369 NRRRIVISEQSGISNVLAKARTFGIELDKQTPEAKQILQRLKELESEGYQFEAAEASFAL 428

Query: 395 LMRQAMGDRQPLFLVQGFQVHCDLLTPAENPAYRNALATVKVTVNGQNILEVAEGNGPVS 454
           LM +A+G RQ  F V+GFQVHCDL+   E     NALATVKV VNG+NILE AEGNGPV+
Sbjct: 429 LMYEALGGRQQFFEVKGFQVHCDLV---EGKEMTNALATVKVAVNGKNILEAAEGNGPVA 485

Query: 455 ALDQALRKALTRFYPQIADFHLTDYKVRILDGGAGTSAKTRVLVESSNGDRRWTTVGVSG 514
           ALD ALRKAL  FYPQ+A F LTDYKVRILDG  GTSAKTR LVES NG +RWTTVGVS 
Sbjct: 486 ALDAALRKALVNFYPQLATFELTDYKVRILDGHTGTSAKTRALVESGNGYQRWTTVGVSP 545

Query: 515 NILEASYQAVVEGIEYGLRL 534
           NIL ASYQAVVEG+EYGL L
Sbjct: 546 NILAASYQAVVEGLEYGLLL 565


Lambda     K      H
   0.318    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 909
Number of extensions: 28
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 577
Length adjustment: 36
Effective length of query: 511
Effective length of database: 541
Effective search space:   276451
Effective search space used:   276451
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)

Align candidate WP_011319948.1 AVA_RS16285 (citramalate synthase)
to HMM TIGR00977 (cimA: citramalate synthase (EC 2.3.1.182))

Software error:

../bin/blast/fastacmd -i /tmp/list.23865.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.23865.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.