Alignments for a candidate for hisA in Trichormus variabilis ATCC 29413

Align 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (characterized)
to candidate WP_011320096.1 AVA_RS17065 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase

Query= reanno::azobra:AZOBR_RS01680
         (249 letters)



>NCBI__GCF_000204075.1:WP_011320096.1
          Length = 257

 Score =  237 bits (604), Expect = 2e-67
 Identities = 117/244 (47%), Positives = 168/244 (68%)

Query: 1   MIIYPAIDLKDGACVRLLRGEMSQATVFNTEPADQARLFESQGFEWLHLVDLNGAFEGKP 60
           M + PAIDL +G CVRL +G+  ++ VF+  P D A+ +  +G   LH+VDL+GA  GK 
Sbjct: 1   MDVIPAIDLLEGRCVRLYQGDYDRSQVFSENPVDVAKQWVDEGATRLHIVDLDGAKAGKV 60

Query: 61  VNGKAVESILGAVAIPVQLGGGIRDLKTIAHWLEKGVSRVILGTVALREPELVREACREF 120
           VN  A+E+I  A++IP+++GGG+RD  ++      GV   ILGTVA+ +P+LV+E C+++
Sbjct: 61  VNLGAIEAIAQAISIPIEIGGGLRDRSSVEQVFNLGVQWAILGTVAVEQPQLVQELCQQY 120

Query: 121 PGKVAVGIDAREGYVAVAGWAETSTIKALDLALKFEDSGVAAIIYTDINRDGAMGGVNVE 180
           PG++ +GIDAR G VA  GW ETS + A  LA++ ++ G AAIIYTDI+RDG + G N++
Sbjct: 121 PGQIIIGIDARNGLVATRGWLETSEVLATQLAVQMQEMGAAAIIYTDIHRDGTLAGPNLD 180

Query: 181 ATSDLAFHLTTPVIASGGVSSIDDLIALKKEEDTGIEGVICGRALYDGRIDPKTALDLLS 240
           A  +LA  ++ PVIASGGVSS+ DL++L   E  G+ GVI GRALY G I+ K AL  + 
Sbjct: 181 ALRELAAAISIPVIASGGVSSVTDLLSLLALEPQGVTGVIVGRALYTGDINLKEALQAIG 240

Query: 241 PAPV 244
           P  +
Sbjct: 241 PGRI 244


Lambda     K      H
   0.318    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 234
Number of extensions: 13
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 257
Length adjustment: 24
Effective length of query: 225
Effective length of database: 233
Effective search space:    52425
Effective search space used:    52425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 46 (22.3 bits)

Align candidate WP_011320096.1 AVA_RS17065 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase)
to HMM TIGR00007 (hisA: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16))

Software error:

../bin/blast/fastacmd -i /tmp/list.19588.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.19588.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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