Alignments for a candidate for argC in Trichormus variabilis ATCC 29413

Align N-acetyl-gamma-glutamyl-phosphate reductase; Short=AGPR; EC 1.2.1.38 (characterized, see rationale)
to candidate WP_011320233.1 AVA_RS17805 N-acetyl-gamma-glutamyl-phosphate reductase

Query= uniprot:E4PLW0
         (388 letters)



>NCBI__GCF_000204075.1:WP_011320233.1
          Length = 352

 Score =  283 bits (725), Expect = 4e-81
 Identities = 150/346 (43%), Positives = 207/346 (59%), Gaps = 2/346 (0%)

Query: 45  IKVGIVGGTGYTGVELLRILAVHPEVSVSCITSRSEAGMPVAEMYPNLRGHYDLAFSEPD 104
           + VGIVG +GY GV+L+R+L  HPEV +  +   S  G   A +YP+L     L+  E D
Sbjct: 7   VPVGIVGASGYGGVQLVRLLMDHPEVELVYLGGESSVGKSFASLYPHLAHAVKLSIEEVD 66

Query: 105 VNVLGA-CDLVFFATPHGVAMRMVPELMSAGVRVVDLSADFRLKDLDVWANWYGMAHESP 163
             V+   C++VF + P+G+A ++VP L+  G +V+DLSAD+R ++L  +  WYG+     
Sbjct: 67  PEVIARRCEVVFLSMPNGLACQIVPTLLEKGCKVLDLSADYRFRNLTTYTTWYGVERSDR 126

Query: 164 EWAEKAVYGLPEVVRDEIRNAQLVANPGCYPTAVQLGFLPLLEQGLVDPKRLIADAKSGA 223
             A+ AVYGLPE+ RD I  AQLV  PG YPTA  L   PLL+QGL+ P+  I DAKSG 
Sbjct: 127 PTADTAVYGLPELYRDRISEAQLVGCPGSYPTASLLALSPLLKQGLIVPETAIVDAKSGT 186

Query: 224 SGAGRQGKIGMLHGEIGESFKAYGASGHRHLPEIRQGLCGAAGGDVGVTFVPHLIPMIRG 283
           SG GR+ K  +L  E   S   Y    HRH PEI Q     AG +V V F PHLIP++RG
Sbjct: 187 SGGGREAKTYLLLAEADNSLAPYSVVRHRHTPEIEQICSDLAGHEVTVQFTPHLIPIVRG 246

Query: 284 IEATLYAELKNPADF-DRLQALFEQRFDDEPFVDVMPFGSHPETRSVRGANQCRMALHRQ 342
             AT+YA L++P    D L  ++   + + P++ V   G +P+T+   G+N C + +   
Sbjct: 247 TLATVYATLRDPGLVGDDLTTIYTAFYRNSPWIKVCESGIYPQTKWAAGSNLCYIGVEVD 306

Query: 343 EQSNIVIVSSVIDNLVKGAAGQAVQNMNIMFGLKETMGLEAPALLP 388
            ++  VIV S IDNL+KG AGQA+Q +NIM G  ET+GL      P
Sbjct: 307 PRTGRVIVMSAIDNLIKGQAGQAIQCLNIMMGWDETLGLPKMGFYP 352


Lambda     K      H
   0.321    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 410
Number of extensions: 11
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 352
Length adjustment: 30
Effective length of query: 358
Effective length of database: 322
Effective search space:   115276
Effective search space used:   115276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)

Align candidate WP_011320233.1 AVA_RS17805 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))

Software error:

../bin/blast/fastacmd -i /tmp/list.9564.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9564.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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