Align N-acetyl-gamma-glutamyl-phosphate reductase; Short=AGPR; EC 1.2.1.38 (characterized, see rationale)
to candidate WP_011320233.1 AVA_RS17805 N-acetyl-gamma-glutamyl-phosphate reductase
Query= uniprot:E4PLW0 (388 letters) >NCBI__GCF_000204075.1:WP_011320233.1 Length = 352 Score = 283 bits (725), Expect = 4e-81 Identities = 150/346 (43%), Positives = 207/346 (59%), Gaps = 2/346 (0%) Query: 45 IKVGIVGGTGYTGVELLRILAVHPEVSVSCITSRSEAGMPVAEMYPNLRGHYDLAFSEPD 104 + VGIVG +GY GV+L+R+L HPEV + + S G A +YP+L L+ E D Sbjct: 7 VPVGIVGASGYGGVQLVRLLMDHPEVELVYLGGESSVGKSFASLYPHLAHAVKLSIEEVD 66 Query: 105 VNVLGA-CDLVFFATPHGVAMRMVPELMSAGVRVVDLSADFRLKDLDVWANWYGMAHESP 163 V+ C++VF + P+G+A ++VP L+ G +V+DLSAD+R ++L + WYG+ Sbjct: 67 PEVIARRCEVVFLSMPNGLACQIVPTLLEKGCKVLDLSADYRFRNLTTYTTWYGVERSDR 126 Query: 164 EWAEKAVYGLPEVVRDEIRNAQLVANPGCYPTAVQLGFLPLLEQGLVDPKRLIADAKSGA 223 A+ AVYGLPE+ RD I AQLV PG YPTA L PLL+QGL+ P+ I DAKSG Sbjct: 127 PTADTAVYGLPELYRDRISEAQLVGCPGSYPTASLLALSPLLKQGLIVPETAIVDAKSGT 186 Query: 224 SGAGRQGKIGMLHGEIGESFKAYGASGHRHLPEIRQGLCGAAGGDVGVTFVPHLIPMIRG 283 SG GR+ K +L E S Y HRH PEI Q AG +V V F PHLIP++RG Sbjct: 187 SGGGREAKTYLLLAEADNSLAPYSVVRHRHTPEIEQICSDLAGHEVTVQFTPHLIPIVRG 246 Query: 284 IEATLYAELKNPADF-DRLQALFEQRFDDEPFVDVMPFGSHPETRSVRGANQCRMALHRQ 342 AT+YA L++P D L ++ + + P++ V G +P+T+ G+N C + + Sbjct: 247 TLATVYATLRDPGLVGDDLTTIYTAFYRNSPWIKVCESGIYPQTKWAAGSNLCYIGVEVD 306 Query: 343 EQSNIVIVSSVIDNLVKGAAGQAVQNMNIMFGLKETMGLEAPALLP 388 ++ VIV S IDNL+KG AGQA+Q +NIM G ET+GL P Sbjct: 307 PRTGRVIVMSAIDNLIKGQAGQAIQCLNIMMGWDETLGLPKMGFYP 352 Lambda K H 0.321 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 410 Number of extensions: 11 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 388 Length of database: 352 Length adjustment: 30 Effective length of query: 358 Effective length of database: 322 Effective search space: 115276 Effective search space used: 115276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 49 (23.5 bits)
Align candidate WP_011320233.1 AVA_RS17805 (N-acetyl-gamma-glutamyl-phosphate reductase)
to HMM TIGR01850 (argC: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38))
../bin/blast/fastacmd -i /tmp/list.9564.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.9564.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.