Align aspartate semialdehyde dehydrogenase (EC 1.2.1.11) (characterized)
to candidate WP_011320317.1 AVA_RS18285 aspartate-semialdehyde dehydrogenase
Query= metacyc::AT1G14810-MONOMER (375 letters) >NCBI__GCF_000204075.1:WP_011320317.1 Length = 347 Score = 350 bits (897), Expect = e-101 Identities = 173/335 (51%), Positives = 239/335 (71%), Gaps = 8/335 (2%) Query: 41 LAVVGVTGAVGQEFLSVLSDRDFPYSSIKMLASKRSAGKRVAFDGHEYTVEELTADSFNG 100 +A++G TGAVG E L +L R+FP + +K+LAS+RS G+ + F G VE ++ + Sbjct: 7 VAILGATGAVGTELLELLESRNFPVAELKLLASERSVGRSLPFKGENIIVEAVSDRALEN 66 Query: 101 VDIALFSAGGSISKEFGPLAAEKGTIVVDNSSAFRMVDGVPLVIPEVNPEAMKGIKVGMG 160 VDI L SAGGS SK + +A EKG +V+DNSSAFRM VPL++PEVNP+A K Sbjct: 67 VDIVLASAGGSTSKAWASVAVEKGAVVIDNSSAFRMNPDVPLIVPEVNPQAAADHK---- 122 Query: 161 KGALIANPNCSTIICLMAVTPLHHHAKVKRMVVSTYQAASGAGAAAMEELVQQTREVLEG 220 +IANPNC+TI+ +AV PLH V+R+V +TYQ+ASGAGA AM E+ Q+ +L+G Sbjct: 123 --GIIANPNCTTILMTLAVWPLHQVRPVQRIVAATYQSASGAGAKAMAEVKTQSSAILKG 180 Query: 221 KPPTCNIFGQQYAFNLFSHNAPILDNGYNEEEMKLVKETRKIWNDTEVKVTATCIRVPVM 280 + P + AFNLF HN+P+ D+GY EEE+K+V ETRKI+ E+++TATC+RVPV+ Sbjct: 181 EEPVAEVLPYPLAFNLFPHNSPLTDSGYCEEELKMVNETRKIFGTQEIRITATCVRVPVL 240 Query: 281 RAHAESVNLQFENPLDENTAREILKKAPGVYIIDDRASNTFPTPLDVSNKDDVAVGRIRR 340 RAH+E++NL+F P + AREIL APGV +++D N FP P++ S +D+V VGRIR+ Sbjct: 241 RAHSEAINLEFAEPFSPDEAREILSHAPGVKLLEDWGKNYFPMPIEASGRDEVLVGRIRQ 300 Query: 341 DVSQDGNFGLDIFVCGDQIRKGAALNAVQIAEMLL 375 D+S GL++++CGDQIRKGAALNAVQIAE+L+ Sbjct: 301 DISHP--CGLELWLCGDQIRKGAALNAVQIAELLV 333 Lambda K H 0.318 0.133 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 321 Number of extensions: 9 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 375 Length of database: 347 Length adjustment: 29 Effective length of query: 346 Effective length of database: 318 Effective search space: 110028 Effective search space used: 110028 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (23.5 bits)
Align candidate WP_011320317.1 AVA_RS18285 (aspartate-semialdehyde dehydrogenase)
to HMM TIGR01296 (asd: aspartate-semialdehyde dehydrogenase (EC 1.2.1.11))
../bin/blast/fastacmd -i /tmp/list.3117.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.3117.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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