Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate WP_011320446.1 AVA_RS18990 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
Query= SwissProt::O06491 (485 letters) >NCBI__GCF_000204075.1:WP_011320446.1 Length = 486 Score = 560 bits (1444), Expect = e-164 Identities = 279/482 (57%), Positives = 367/482 (76%), Gaps = 4/482 (0%) Query: 8 ITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGRSE 67 I EL + + KKE ++ E+ IQ ++ K+ +FL + ++A A+ +D + E Sbjct: 4 IRELHEQLVKKERSAVEITQETLDHIQELEPKLHSFLHITAQQALEQARAVDAKIAAGEE 63 Query: 68 HGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMDEF 127 GLL G+PIGVKDN+ TKG+ TTC+S+ILENF P Y++TV Q+L DA AV +GK N+DEF Sbjct: 64 IGLLAGIPIGVKDNMCTKGIPTTCASRILENFVPPYESTVTQKLLDAGAVVVGKTNLDEF 123 Query: 128 AMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCG 187 AMGSSTENSAY++T NPW+L VPGGSSGGSAAAVAA E +LGSDTGGSIRQPASFCG Sbjct: 124 AMGSSTENSAYQVTANPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCG 183 Query: 188 VVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANVDVPD 247 VVGLKPTYG VSRYGLVA+ASSLDQIGP ++VED A LL+AI+G D DSTS V++PD Sbjct: 184 VVGLKPTYGLVSRYGLVAYASSLDQIGPFGKSVEDTAILLKAIAGYDPKDSTSLKVEIPD 243 Query: 248 FLSSLTGDIKG---LKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPHSKY 304 +++SL D+K L+I V KE GEG+ ++V A++ L+ LGA +S P+ +Y Sbjct: 244 YVASLKPDLKARGKLRIGVIKETFGEGLDSVVEQAVTKAIEQLQRLGAEIHVISCPNFRY 303 Query: 305 ALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLGTF 364 + +YY+++ SEASANLAR+DG++YG+R DNL+ +YK+TRA GFG EVKRRIM+GT+ Sbjct: 304 GVPSYYIIAPSEASANLARYDGVKYGWRAPEGDNLLSMYKRTRATGFGAEVKRRIMIGTY 363 Query: 365 ALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTMYAN 424 ALS+GYYDAYY KAQKVRTLIK+DFE+ F+ DV+V PT PT AFK GE T DP++MY N Sbjct: 364 ALSAGYYDAYYLKAQKVRTLIKQDFENAFKNVDVLVSPTAPTTAFKAGEKTADPISMYLN 423 Query: 425 DILTIPVNLAGVPGISVPCGLAD-GLPLGLQIIGKHFDESTVYRVAHAFEQATDHHKAKP 483 D++TIPVNLAG+PG+S+PCG + GLP+GLQ+IGK E + +VA+A+EQ+T H ++P Sbjct: 424 DLMTIPVNLAGLPGLSLPCGFDEQGLPIGLQLIGKVLREDQLLQVAYAYEQSTSWHLSQP 483 Query: 484 EL 485 ++ Sbjct: 484 KI 485 Lambda K H 0.315 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 656 Number of extensions: 23 Number of successful extensions: 3 Number of sequences better than 1.0e-02: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 485 Length of database: 486 Length adjustment: 34 Effective length of query: 451 Effective length of database: 452 Effective search space: 203852 Effective search space used: 203852 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 52 (24.6 bits)
Align candidate WP_011320446.1 AVA_RS18990 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))
../bin/blast/fastacmd -i /tmp/list.16614.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16614.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.
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