Alignments for a candidate for gatA in Trichormus variabilis ATCC 29413

Align Glutamyl-tRNA(Gln) amidotransferase subunit A; Glu-ADT subunit A; EC 6.3.5.7 (characterized)
to candidate WP_011320446.1 AVA_RS18990 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA

Query= SwissProt::O06491
         (485 letters)



>NCBI__GCF_000204075.1:WP_011320446.1
          Length = 486

 Score =  560 bits (1444), Expect = e-164
 Identities = 279/482 (57%), Positives = 367/482 (76%), Gaps = 4/482 (0%)

Query: 8   ITELKQLIHKKEIKISDLVDESYKRIQAVDDKVQAFLALDEERARAYAKELDEAVDGRSE 67
           I EL + + KKE    ++  E+   IQ ++ K+ +FL +  ++A   A+ +D  +    E
Sbjct: 4   IRELHEQLVKKERSAVEITQETLDHIQELEPKLHSFLHITAQQALEQARAVDAKIAAGEE 63

Query: 68  HGLLFGMPIGVKDNIVTKGLRTTCSSKILENFDPIYDATVVQRLQDAEAVTIGKLNMDEF 127
            GLL G+PIGVKDN+ TKG+ TTC+S+ILENF P Y++TV Q+L DA AV +GK N+DEF
Sbjct: 64  IGLLAGIPIGVKDNMCTKGIPTTCASRILENFVPPYESTVTQKLLDAGAVVVGKTNLDEF 123

Query: 128 AMGSSTENSAYKLTKNPWNLDTVPGGSSGGSAAAVAAGEVPFSLGSDTGGSIRQPASFCG 187
           AMGSSTENSAY++T NPW+L  VPGGSSGGSAAAVAA E   +LGSDTGGSIRQPASFCG
Sbjct: 124 AMGSSTENSAYQVTANPWDLSRVPGGSSGGSAAAVAAEECVVALGSDTGGSIRQPASFCG 183

Query: 188 VVGLKPTYGRVSRYGLVAFASSLDQIGPITRTVEDNAFLLQAISGVDKMDSTSANVDVPD 247
           VVGLKPTYG VSRYGLVA+ASSLDQIGP  ++VED A LL+AI+G D  DSTS  V++PD
Sbjct: 184 VVGLKPTYGLVSRYGLVAYASSLDQIGPFGKSVEDTAILLKAIAGYDPKDSTSLKVEIPD 243

Query: 248 FLSSLTGDIKG---LKIAVPKEYLGEGVGKEARESVLAALKVLEGLGATWEEVSLPHSKY 304
           +++SL  D+K    L+I V KE  GEG+     ++V  A++ L+ LGA    +S P+ +Y
Sbjct: 244 YVASLKPDLKARGKLRIGVIKETFGEGLDSVVEQAVTKAIEQLQRLGAEIHVISCPNFRY 303

Query: 305 ALATYYLLSSSEASANLARFDGIRYGYRTDNADNLIDLYKQTRAEGFGNEVKRRIMLGTF 364
            + +YY+++ SEASANLAR+DG++YG+R    DNL+ +YK+TRA GFG EVKRRIM+GT+
Sbjct: 304 GVPSYYIIAPSEASANLARYDGVKYGWRAPEGDNLLSMYKRTRATGFGAEVKRRIMIGTY 363

Query: 365 ALSSGYYDAYYKKAQKVRTLIKKDFEDVFEKYDVIVGPTTPTPAFKIGENTKDPLTMYAN 424
           ALS+GYYDAYY KAQKVRTLIK+DFE+ F+  DV+V PT PT AFK GE T DP++MY N
Sbjct: 364 ALSAGYYDAYYLKAQKVRTLIKQDFENAFKNVDVLVSPTAPTTAFKAGEKTADPISMYLN 423

Query: 425 DILTIPVNLAGVPGISVPCGLAD-GLPLGLQIIGKHFDESTVYRVAHAFEQATDHHKAKP 483
           D++TIPVNLAG+PG+S+PCG  + GLP+GLQ+IGK   E  + +VA+A+EQ+T  H ++P
Sbjct: 424 DLMTIPVNLAGLPGLSLPCGFDEQGLPIGLQLIGKVLREDQLLQVAYAYEQSTSWHLSQP 483

Query: 484 EL 485
           ++
Sbjct: 484 KI 485


Lambda     K      H
   0.315    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 656
Number of extensions: 23
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 486
Length adjustment: 34
Effective length of query: 451
Effective length of database: 452
Effective search space:   203852
Effective search space used:   203852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_011320446.1 AVA_RS18990 (Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA)
to HMM TIGR00132 (gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC 6.3.5.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.6635.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6635.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.