Alignments for a candidate for serA in Trichormus variabilis ATCC 29413

Align D-3-phosphoglycerate dehydrogenase; EC 1.1.1.95 (characterized, see rationale)
to candidate WP_011320458.1 AVA_RS19050 phosphoglycerate dehydrogenase

Query= uniprot:Q6LWW6
         (523 letters)



>NCBI__GCF_000204075.1:WP_011320458.1
          Length = 526

 Score =  442 bits (1136), Expect = e-128
 Identities = 242/526 (46%), Positives = 340/526 (64%), Gaps = 3/526 (0%)

Query: 1   MSKILITDPLHESAVEILKQAGEVEVATGLTVEELKLKIKDVDALVIRSGTTATREIIEA 60
           MSK+L++DP+ ++ ++IL Q   V+V TGL   EL   I   DAL+IRSGT  T+EIIEA
Sbjct: 1   MSKVLVSDPIDQAGIDILSQVATVDVNTGLKPAELIEIIGQYDALMIRSGTRVTQEIIEA 60

Query: 61  SENLKVIARAGVGVDNVDLDAATEKGIVVVNAPDASSISVAELLFGMMLAAARNIPQATA 120
              LK+I RAGVGVDNVD+ AAT +GIVVVN+P+ ++I+ AE    MML+ +R+IP A A
Sbjct: 61  GTQLKIIGRAGVGVDNVDVPAATRRGIVVVNSPEGNTIAAAEHALAMMLSLSRHIPDANA 120

Query: 121 SIKSGKWDRKSFKGMEIYGKTLGIVGLGRIGQQVAKRAQAFGMTIVAYDPYIPEDVASEL 180
           S+K G+WDRK+F G E+Y KTLG+VGLG+IG  VA  A+A GM ++AYDP+I  + A +L
Sbjct: 121 SVKRGEWDRKTFVGAEVYKKTLGVVGLGKIGSHVATVAKAMGMKLLAYDPFISTERAEQL 180

Query: 181 GIKLLTVDELCTVSDFITLHVPLTPKTKHMIGKEQIALMKSNMVIMNCARGGLIDEAALY 240
           G +L+ +D L   SD+ITLH+P TP+T H+I    +A MK    I+NCARGG+IDEAAL 
Sbjct: 181 GCQLVDLDLLMQQSDYITLHIPKTPETTHIINATTLAKMKPTARIINCARGGIIDEAALA 240

Query: 241 DALNSGKIKAAALDVFEQEPPKESPLLTL-NNLIGTPHQGASTEEAQLSAGTIVAEQTVK 299
            A+  GKI  AALDVFE EP  ES L  +  ++I TPH GAST EAQ++    VAEQ   
Sbjct: 241 AAVKEGKIAGAALDVFESEPLGESDLRAIGKDIILTPHLGASTTEAQVNVAIDVAEQIRD 300

Query: 300 ILKGESAENVVNLPMVPTEKMKKLKPYMVLAEKMGSMAIQYLDNSIELLEITYMGGLAKE 359
           +L G  A + VN+P +  + +++LKPYM LAE +G +  Q     +ELL +   G LA  
Sbjct: 301 VLLGLPARSAVNIPGLGPDVLEELKPYMQLAETLGKLVGQLAGGRVELLTVRLQGELATN 360

Query: 360 KTEILKRSFLKGILAPILLAGVNLVNAPVIAKSRNIKIAE-GTMSESDYGNSIKISAKGE 418
           K++ L  + LKG+L   L   VN VNA + AK R I++ E    S  DY  S+++ A G 
Sbjct: 361 KSQPLVIASLKGLLHQALRERVNYVNANIEAKERGIRVIETRDASARDYAGSLRLEATGT 420

Query: 419 NDEISIIGS-IEHNEVVFREINGYRMDIKPEGTICIIKHIDRPGMVGKVGVLLGEHGINI 477
               S+ G+ +   E+   +++G+ +++ P   +    H D PG++GK+G LLG   +NI
Sbjct: 421 LGTHSVTGALLGDKEIHLTDVDGFPINVPPSKYMLFTLHRDMPGIIGKLGSLLGSFNVNI 480

Query: 478 AGMQVGRREPGGHSIMFLDIDHMISDEVLDEIRKMENVRAAKSINI 523
           A MQVGR+   G ++M L ID  + D +L EI K+  +R A ++ +
Sbjct: 481 ASMQVGRKIVRGDAVMALSIDDPLPDGILAEITKVPGIRDAYTVTL 526


Lambda     K      H
   0.316    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 700
Number of extensions: 32
Number of successful extensions: 3
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 526
Length adjustment: 35
Effective length of query: 488
Effective length of database: 491
Effective search space:   239608
Effective search space used:   239608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)

Align candidate WP_011320458.1 AVA_RS19050 (phosphoglycerate dehydrogenase)
to HMM TIGR01327 (serA: phosphoglycerate dehydrogenase (EC 1.1.1.95))

Software error:

../bin/blast/fastacmd -i /tmp/list.30563.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.30563.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.