Alignments for a candidate for proB in Trichormus variabilis ATCC 29413

Align glutamate 5-kinase (EC 2.7.2.11) (characterized)
to candidate WP_011320502.1 AVA_RS19295 glutamate 5-kinase

Query= BRENDA::P0A7B5
         (367 letters)



>NCBI__GCF_000204075.1:WP_011320502.1
          Length = 369

 Score =  286 bits (732), Expect = 6e-82
 Identities = 159/366 (43%), Positives = 225/366 (61%), Gaps = 4/366 (1%)

Query: 4   SQTLVVKLGTSVLTGGSR-RLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGY 62
           ++T+VVK+GTS LT     +L  + I  L    + L   G+++++V+SGA+  G   LG 
Sbjct: 2   TKTIVVKIGTSSLTQPETGQLALSTIATLAETLSYLRQQGNQVILVSSGAVGVGCARLGL 61

Query: 63  PELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLR 122
            E P  IA KQ +AAVGQ RL+++++ LF+     + Q+LLTR+D+  R R+LN  +T R
Sbjct: 62  TERPKAIALKQAVAAVGQGRLMRVYDDLFTTLQQPIAQVLLTRSDLVQRSRYLNVYNTFR 121

Query: 123 ALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSN 182
            LL   ++PV+NEND VA  E+K GDND LSAL A L  AD L LLTD   LY+ADPRS 
Sbjct: 122 ELLALGVIPVVNENDTVAVDELKFGDNDTLSALVASLVEADWLFLLTDVDRLYSADPRSV 181

Query: 183 PQAELIKDVYGIDDA--LRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPG 240
           P A  I  V  I +   L+   G   S  GTGGM TK+ AA +A  AG+ T+I  G  P 
Sbjct: 182 PDARPISLVTSIKELADLQVQTGSQGSQWGTGGMMTKISAARIAIAAGVRTVITQGRYPR 241

Query: 241 VIGDVMEGISVGTLFHAQATPLENRKRWI-FGAPPAGEITVDEGATAAILERGSSLLPKG 299
            I  +++G  +GT F  Q  P   RKRWI +G  P G++ +D GA AAI++ G SLLP G
Sbjct: 242 NIEKIIQGELIGTHFQPQPEPTSARKRWIAYGLVPTGKLYLDSGAIAAIVKAGKSLLPAG 301

Query: 300 IKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAGHHSQEIDAILGYEYGPVAV 359
           +K+V G F   + +++ + +G +IA G+  Y+S  L++I G HS+EI  ILGY      +
Sbjct: 302 VKTVAGEFEPQDAVQLLDPQGNEIARGLVNYSSKDLQQICGRHSKEISTILGYVGAETVI 361

Query: 360 HRDDMI 365
           HRD+++
Sbjct: 362 HRDNLV 367


Lambda     K      H
   0.318    0.135    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 324
Number of extensions: 16
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 369
Length adjustment: 30
Effective length of query: 337
Effective length of database: 339
Effective search space:   114243
Effective search space used:   114243
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_011320502.1 AVA_RS19295 (glutamate 5-kinase)
to HMM TIGR01027 (proB: glutamate 5-kinase (EC 2.7.2.11))

Software error:

../bin/blast/fastacmd -i /tmp/list.16178.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16178.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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