Alignments for a candidate for cysE in Trichormus variabilis ATCC 29413

Align Serine acetyltransferase; SAT; EC 2.3.1.30 (characterized)
to candidate WP_011320646.1 AVA_RS20040 serine O-acetyltransferase

Query= SwissProt::Q06750
         (217 letters)



>NCBI__GCF_000204075.1:WP_011320646.1
          Length = 250

 Score =  228 bits (580), Expect = 1e-64
 Identities = 114/208 (54%), Positives = 145/208 (69%)

Query: 1   MFFRMLKEDIDTVFDQDPAARSYFEVILTYSGLHAIWAHRIAHALYKRKFYFLARLISQV 60
           +F   L  D   +F++DPAAR++ EVI  Y GLHAI  HR AH L++R   F  RLIS +
Sbjct: 27  VFLEPLLSDFLIIFERDPAARNWLEVIFCYPGLHAICLHRFAHWLHRRGVVFFPRLISHL 86

Query: 61  SRFFTGIEIHPGATIGRRFFIDHGMGVVIGETCEIGNNVTVFQGVTLGGTGKEKGKRHPT 120
           +RF TGIEIHPGA IG+  FIDHGMGVVIGET  +G+   ++QGVTLGGTGKE GKRHPT
Sbjct: 87  ARFLTGIEIHPGAVIGKGVFIDHGMGVVIGETAIVGDYALIYQGVTLGGTGKESGKRHPT 146

Query: 121 IKDDALIATGAKVLGSITVGEGSKIGAGSVVLHDVPDFSTVVGIPGRVVVQNGKKVRRDL 180
           + D  ++ +GAKVLG+I +G+  +IGAGSVVL DVP   TVVGIPGR++    K     L
Sbjct: 147 VGDHVVVGSGAKVLGNIQIGDRVRIGAGSVVLRDVPHDCTVVGIPGRIITHKPKTDLSPL 206

Query: 181 NHQDLPDPVADRFKSLEQQILELKAELE 208
            H  LPD  AD  +SL  +I +L+ +L+
Sbjct: 207 EHGKLPDVEADVIRSLLSRIEQLEQKLQ 234


Lambda     K      H
   0.323    0.141    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 225
Number of extensions: 9
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 217
Length of database: 250
Length adjustment: 23
Effective length of query: 194
Effective length of database: 227
Effective search space:    44038
Effective search space used:    44038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)

Align candidate WP_011320646.1 AVA_RS20040 (serine O-acetyltransferase)
to HMM TIGR01172 (cysE: serine O-acetyltransferase (EC 2.3.1.30))

Software error:

../bin/blast/fastacmd -i /tmp/list.6686.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.6686.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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