Alignments for a candidate for leuD in Trichormus variabilis ATCC 29413

Align 3-isopropylmalate dehydratase small subunit; EC 4.2.1.33; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase (uncharacterized)
to candidate WP_011320658.1 AVA_RS20105 3-isopropylmalate dehydratase small subunit

Query= curated2:Q8YX03
         (202 letters)



>NCBI__GCF_000204075.1:WP_011320658.1
          Length = 202

 Score =  390 bits (1002), Expect = e-114
 Identities = 194/201 (96%), Positives = 197/201 (98%)

Query: 1   MVSEVREVTGRAIPLVGNDIDTDRIIPARYLKAITFDGLREGAFIDDRTALKGAHPFDQP 60
           MVSEV+EVTGR IPLVGNDIDTDRIIPARYLKAITFDGLREGAFIDDRTALKG HPFDQP
Sbjct: 1   MVSEVKEVTGRGIPLVGNDIDTDRIIPARYLKAITFDGLREGAFIDDRTALKGEHPFDQP 60

Query: 61  QYQDANILIVNRNFGCGSSREHAPQALSKWGIQAVIGESFAEIFFGNCVAIGVPCVTADE 120
           QYQ ANILIVNRNFGCGSSREHAPQALSKWGIQ+VIGESFAEIFFGNCVAIGVPCVTADE
Sbjct: 61  QYQGANILIVNRNFGCGSSREHAPQALSKWGIQSVIGESFAEIFFGNCVAIGVPCVTADE 120

Query: 121 AIVKQLQELVAANPQANVSINLETLQVQVGDFIAPISIGEGTRSTFITGAWDACGQLVAN 180
           AIVKQLQELVAANPQANVSINLETLQVQVGDF APISIGEGTRSTFITGAWDACGQLVAN
Sbjct: 121 AIVKQLQELVAANPQANVSINLETLQVQVGDFTAPISIGEGTRSTFITGAWDACGQLVAN 180

Query: 181 TEQVRVTAAKLPYVSWGKLAA 201
           TEQVRVT+AKLPYVSWGKLAA
Sbjct: 181 TEQVRVTSAKLPYVSWGKLAA 201


Lambda     K      H
   0.320    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 254
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 202
Length adjustment: 21
Effective length of query: 181
Effective length of database: 181
Effective search space:    32761
Effective search space used:    32761
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)

Align candidate WP_011320658.1 AVA_RS20105 (3-isopropylmalate dehydratase small subunit)
to HMM TIGR00171 (leuD: 3-isopropylmalate dehydratase, small subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.11153.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.11153.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.