Alignments for a candidate for leuC in Trichormus variabilis ATCC 29413

Align 3-isopropylmalate dehydratase large subunit; EC 4.2.1.33 (characterized, see rationale)
to candidate WP_011320659.1 AVA_RS20110 3-isopropylmalate dehydratase large subunit

Query= uniprot:A0A1X9Z7T5
         (470 letters)



>NCBI__GCF_000204075.1:WP_011320659.1
          Length = 467

 Score =  494 bits (1273), Expect = e-144
 Identities = 247/467 (52%), Positives = 322/467 (68%), Gaps = 2/467 (0%)

Query: 1   MSK-TLVEKIWDAHVVKSEEGFPDILYIDTHLIHEVTSPQAFDGLRKRGLPVFRPKQTVA 59
           MSK TL +K+WD H V +       L+I  HL+HEVTSPQAF  LR+RGL V  P++TVA
Sbjct: 1   MSKGTLFDKVWDLHTVGTLPSGLTQLFIGLHLVHEVTSPQAFAMLRERGLKVLFPERTVA 60

Query: 60  TADHNVPTLNQLLPIKEELSRYQVDMLTKNCAEFGVELYGLGHPFQGIVHVIGPELGITL 119
           T DH VPT NQ  P  + L+   +  L +NC E  +  Y +G   QGIVHVI PELG+T 
Sbjct: 61  TVDHIVPTENQARPFVDRLAEEMIQALEQNCQENNITFYNIGSGNQGIVHVIAPELGLTQ 120

Query: 120 PGKTMVCGDSHTSTHGAFGAIAFGIGTSQVEQVFATQCLLQSKPKTMKIEVNGELGKGVG 179
           PG T+ CGDSHTS+HGAFGAIAFGIGTSQV  V A+Q L  SK K  KIEVNG L  GV 
Sbjct: 121 PGMTIACGDSHTSSHGAFGAIAFGIGTSQVRDVLASQTLSLSKLKVRKIEVNGTLNPGVY 180

Query: 180 AKDIILYIIAKISAAGGTGYFIEYAGSAIEALSMEARMTICNMSIEMGARGGLIAPDQTT 239
           AKD+IL+II  +   GG GY  EYAG+  E ++ME RMT+CNM+IE GAR G + PDQ T
Sbjct: 181 AKDVILHIIRTLGVKGGVGYAYEYAGTTFEQMNMEERMTVCNMAIEGGARCGYVNPDQVT 240

Query: 240 FDYIKGREFAPAGEEWDKALAYWKTLYSDADAKFDSVLTFDAADIAPMITYGTNPGMGMG 299
           +DY++GR+FAP G +W+KA+A+W+++ SDADA++D V+ F+AADI P +T+G  PG G+G
Sbjct: 241 YDYLQGRDFAPQGADWEKAVAWWESIKSDADAEYDDVIVFNAADIPPTVTWGITPGQGIG 300

Query: 300 IQEHIPATGAQPEKEKLSYQKALDYMGFDDDSSLIGKPVDYVFIGSCTNSRIEDLREVAD 359
           + + IP      E+++   ++A  YM       + G  +D  FIGSCTN R+ DL+E A 
Sbjct: 301 VNQLIPQPEELLEEDRFVAEEAYRYMDLYPGQPIKGTKIDVCFIGSCTNGRLSDLQEAAK 360

Query: 360 FVKDKRKADNVTVWIVPGSKQVEQQAKNEGLDKIFEAAGFQLREPGCSACLGMNEDKIPA 419
             K +  A+ V  ++VPGS++V++ A+ EGLDKIFEAAGF+ REPGCS CL MN DK+  
Sbjct: 361 IAKGRHVAEGVKAFVVPGSERVKKAAEAEGLDKIFEAAGFEWREPGCSMCLAMNPDKLEG 420

Query: 420 GKYCVSTSNRNFEGRQGQ-NARTLLASPLTAAAAAVTGKITDVRDLL 465
            +   S+SNRNF+GRQG  + RTLL SP   A AA+ G++ DVR+LL
Sbjct: 421 RQISASSSNRNFKGRQGSASGRTLLMSPAMVATAAIQGEVADVRELL 467


Lambda     K      H
   0.317    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 613
Number of extensions: 24
Number of successful extensions: 1
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 467
Length adjustment: 33
Effective length of query: 437
Effective length of database: 434
Effective search space:   189658
Effective search space used:   189658
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_011320659.1 AVA_RS20110 (3-isopropylmalate dehydratase large subunit)
to HMM TIGR00170 (leuC: 3-isopropylmalate dehydratase, large subunit (EC 4.2.1.33))

Software error:

../bin/blast/fastacmd -i /tmp/list.26429.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26429.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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