Alignments for a candidate for hisH in Trichormus variabilis ATCC 29413

Align imidazole glycerol-phosphate synthase (subunit 1/2) (EC 4.3.2.10) (characterized)
to candidate WP_011320708.1 AVA_RS20365 imidazole glycerol phosphate synthase subunit HisH

Query= BRENDA::Q5NMD4
         (213 letters)



>NCBI__GCF_000204075.1:WP_011320708.1
          Length = 211

 Score =  145 bits (366), Expect = 5e-40
 Identities = 88/206 (42%), Positives = 118/206 (57%), Gaps = 12/206 (5%)

Query: 9   VALIDYGAGNLRSVANALLASGLARENLVVTANPDEVLQADRVVLPGVGAFASCMQALKA 68
           VA+IDY  GNL SV   L  +G      ++T +  E+ +AD V+LPGVGAF   +Q+L++
Sbjct: 4   VAVIDYEMGNLHSVCKGLEKAGATP---IITHSHQELTKADAVILPGVGAFDPAVQSLRS 60

Query: 69  IPDMVPALEKAVLEKGRPFLGICVGMQLLADQGEEYGVHQGLGWIKGKVTPLRPNDPSCK 128
                P   K  +  G+PFLGIC+G+Q+L +   E G   GLG IKGKV     ++P   
Sbjct: 61  RDLEQPI--KDTIASGKPFLGICLGLQILFESSAE-GTQPGLGIIKGKVRRFI-SEPGIT 116

Query: 129 VPHMGWNQIGLTTDSHPLLR----AGEAYFLHSYAFVPEDESTLLATTEHGG-LVTAAVG 183
           +PHMGWNQ+ LT     L          YF+HSY   P +     AT  HG   VTAA+ 
Sbjct: 117 IPHMGWNQLELTQPKSILWEHLPPQPWVYFVHSYYVDPVEPQVRAATVTHGTQTVTAAIA 176

Query: 184 RDNIMGVQFHPEKSQSYGLEFLSRFL 209
            +N+M VQFHPEKS + GL+ LS F+
Sbjct: 177 HENLMAVQFHPEKSSNIGLQILSNFV 202


Lambda     K      H
   0.318    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 145
Number of extensions: 13
Number of successful extensions: 7
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 211
Length adjustment: 21
Effective length of query: 192
Effective length of database: 190
Effective search space:    36480
Effective search space used:    36480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)

Align candidate WP_011320708.1 AVA_RS20365 (imidazole glycerol phosphate synthase subunit HisH)
to HMM TIGR01855 (hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (EC 2.4.2.-))

Software error:

../bin/blast/fastacmd -i /tmp/list.27582.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.27582.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.