Alignments for a candidate for hisD in Trichormus variabilis ATCC 29413

Align histidinol dehydrogenase (EC 1.1.1.23) (characterized)
to candidate WP_011320885.1 AVA_RS21305 histidinol dehydrogenase

Query= BRENDA::Q8G2R2
         (430 letters)



>NCBI__GCF_000204075.1:WP_011320885.1
          Length = 433

 Score =  362 bits (928), Expect = e-104
 Identities = 196/399 (49%), Positives = 263/399 (65%), Gaps = 1/399 (0%)

Query: 31  DRAVREIVDRVRREGDSALLDYSRRFDRIDLEKTGIAVTEAEIDAAFDAAPASTVEALKL 90
           +  VRE++  V+R+GD A+L Y+  FD   L+   + VT +E+DAA+       +EA++L
Sbjct: 31  EATVREVLQAVKRQGDKAVLHYTDEFDNQILKAEELRVTGSELDAAYQQVSKELLEAIQL 90

Query: 91  ARDRIEKHHARQLPKDDRYTDALGVELGSRWTAIEAVGLYVPGGTASYPSSVLMNAMPAK 150
           A  +IE  H +++PK   +     + LG R+T ++  GLYVPGG A+Y S+VLMNA+PAK
Sbjct: 91  ASRQIEAFHRQRVPKSWVHFGDDDIVLGKRYTPVDRAGLYVPGGRAAYVSTVLMNAIPAK 150

Query: 151 VAGVDRIVMVVP-APDGNLNPLVLVAARLAGVSEIYRVGGAQAIAALAYGTETIRPVAKI 209
           VAGV RIVM  P      +NP VLVAA+  GV EIYRVGGAQAIAALAYGTETI  V  I
Sbjct: 151 VAGVPRIVMATPPGAQKAINPAVLVAAQEVGVQEIYRVGGAQAIAALAYGTETIPKVDVI 210

Query: 210 VGPGNAYVAAAKRIVFGTVGIDMIAGPSEVLIVADKDNNPDWIAADLLAQAEHDTAAQSI 269
            GPGN YV  AK++V+GTVGID +AGPSEVLI+AD+  NP  +A D+LAQAEHD  A +I
Sbjct: 211 TGPGNIYVTLAKKLVYGTVGIDSLAGPSEVLIIADEGANPVHVATDMLAQAEHDPMAAAI 270

Query: 270 LMTNDEAFAHAVEEAVERQLHTLARTETASASWRDFGAVILVKDFEDAIPLANRIAAEHL 329
           L T D A A  V+ AVERQL    R      +   +G ++LV+  + A  L+N  A EHL
Sbjct: 271 LFTTDPALAKNVQVAVERQLVDHPRRIDTEKAIAHYGLIVLVESLDAAAELSNEFAPEHL 330

Query: 330 EIAVADAEAFVPRIRNAGSIFIGGYTPEVIGDYVGGCNHVLPTARSARFSSGLSVLDYMK 389
           E+ V D  A +P IR+AG+IF+G  TPE +GDY+ G NH LPT+ +AR++S LSV  ++K
Sbjct: 331 ELEVKDPWAVLPNIRHAGAIFLGYSTPEAVGDYLAGPNHTLPTSGAARYASALSVETFLK 390

Query: 390 RTSLLKLGSEQLRALGPAAIEIARAEGLDAHAQSVAIRL 428
            +S+++     L  +  A   +A AEGL +HA SV  R+
Sbjct: 391 HSSIIQYSQTALNKVAGAIDALATAEGLPSHADSVKRRI 429


Lambda     K      H
   0.318    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 427
Number of extensions: 19
Number of successful extensions: 2
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 433
Length adjustment: 32
Effective length of query: 398
Effective length of database: 401
Effective search space:   159598
Effective search space used:   159598
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)

Align candidate WP_011320885.1 AVA_RS21305 (histidinol dehydrogenase)
to HMM TIGR00069 (hisD: histidinol dehydrogenase (EC 1.1.1.23))

Software error:

../bin/blast/fastacmd -i /tmp/list.26248.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.26248.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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