Alignments for a candidate for carA in Trichormus variabilis ATCC 29413

Align Carbamoyl-phosphate synthase small chain, chloroplastic; Carbamoyl-phosphate synthetase glutamine chain; Protein VENOSA 6; EC 6.3.5.5 (characterized)
to candidate WP_011321085.1 AVA_RS22395 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit

Query= SwissProt::Q9LVW7
         (430 letters)



>NCBI__GCF_000204075.1:WP_011321085.1
          Length = 388

 Score =  387 bits (993), Expect = e-112
 Identities = 190/377 (50%), Positives = 264/377 (70%), Gaps = 6/377 (1%)

Query: 58  ARLVLEDGSIWPAKSFGAPGTRIAELVFNTSLTGYQEILTDPSYAGQFVLMTNPQIGNTG 117
           A LVL DG+ +   SFGA GT I E+VFNT +TGYQE+LTDPSY GQ V+ T P++GNTG
Sbjct: 9   ALLVLADGTAYRGWSFGATGTTIGEVVFNTGMTGYQEVLTDPSYCGQIVVFTYPELGNTG 68

Query: 118 VNPDDEESGQCFLTGLVIRNLSISTSNWRCTKTLADYLTERDIMGVYDLDTRAITRRLRE 177
           VNP+DEES +  + G + RN+    SNWR  ++L DYL +  I G++ +DTRA+TR++R 
Sbjct: 69  VNPEDEESARPQVRGAIARNICHKPSNWRSAQSLPDYLKQHQIPGIFGIDTRALTRKIRM 128

Query: 178 DGSLIGVLSTEQSKTDDELLQMSRSWDIVGIDLISDVSCKSPYEWVDKTNAEWDFNTNS- 236
            G++ G +STE     + L Q+  + ++ G++L+ +V+  + YEW D T A W+FN    
Sbjct: 129 YGAMNGGISTEILDEAELLEQVQAAPNMAGLNLVREVTTSTVYEWSDPTTAVWEFNPEGT 188

Query: 237 -RDGKSYKVIAYDFGIKQNILRRLSSYGCQITVVPSTFPAAEALKMNPDGILFSNGPGDP 295
             +G+S  V+A DFG+K+NILRRL+SYGC++ VVP+       LK NPDGI  SNGPGDP
Sbjct: 189 VNNGESLTVVALDFGVKRNILRRLASYGCRVIVVPADTSPEAILKYNPDGIFLSNGPGDP 248

Query: 296 SAVPYAVETVKELL-GKVPVYGICMGHQLLGQALGGKTFKMKFGHHGGNHPVRNNRTGQV 354
           SAV   + T K LL  + P++GICMGHQ+LG ALG +TFK+KFGH G N P    +  +V
Sbjct: 249 SAVTEGITTAKVLLESEKPIFGICMGHQILGHALGAETFKLKFGHRGLNQPAGLQQ--RV 306

Query: 355 EISAQNHNYAVDPASLPGG-VEVTHVNLNDGSCAGLSFPEMNVMSLQYHPEASPGPHDSD 413
           EI++QNH++A+DP SLP   VE++H+NLND + AGL    + + S+QYHPEASPGPHD+D
Sbjct: 307 EITSQNHSFAIDPDSLPEAVVEISHLNLNDRTVAGLRHKSLPIFSVQYHPEASPGPHDAD 366

Query: 414 NAFREFIELMKRSKQSS 430
             F +F+  M+ +KQ++
Sbjct: 367 YLFAQFVHQMRTTKQAT 383


Lambda     K      H
   0.316    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 526
Number of extensions: 32
Number of successful extensions: 5
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 388
Length adjustment: 31
Effective length of query: 399
Effective length of database: 357
Effective search space:   142443
Effective search space used:   142443
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)

Align candidate WP_011321085.1 AVA_RS22395 (glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit)
to HMM TIGR01368 (carA: carbamoyl-phosphate synthase, small subunit (EC 6.3.5.5))

Software error:

../bin/blast/fastacmd -i /tmp/list.16011.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.16011.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

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