Alignments for a candidate for aroG in Trichormus variabilis ATCC 29413

Align 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (characterized)
to candidate WP_011321312.1 AVA_RS23605 3-deoxy-7-phosphoheptulonate synthase

Query= BRENDA::Q9WYH8
         (338 letters)



>NCBI__GCF_000204075.1:WP_011321312.1
          Length = 352

 Score =  300 bits (767), Expect = 5e-86
 Identities = 163/342 (47%), Positives = 226/342 (66%), Gaps = 8/342 (2%)

Query: 1   MIVVLKPGSTEEDIRKVVKLAESYNLKCHISKGQERTVIGIIGDDRYVVADKFESLD-CV 59
           MIVV+K GS E +I ++     S+ L      G+ + VIG++G+   +   + + +   +
Sbjct: 1   MIVVMKVGSPEVEINRINDELTSWGLTPEKIIGKHKVVIGLVGETADLDPLQIQEVSPWI 60

Query: 60  ESVVRVLKPYKLVSREF-HPEDTVIDL----GDVKIG-NGYFTIIAGPCSVEGREMLMET 113
           E V+RV  PYK  SR++ H E + + +    G V  G N    ++AGPCSVE  EM++ET
Sbjct: 61  EQVLRVELPYKRASRQYRHGEASEVVVNTPDGPVVFGENQALVVVAGPCSVENEEMIIET 120

Query: 114 AHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVTEALGEDDLPK 173
           A  +   G K LRGGAYKPRTSPY+FQG GE  LE L +A D  G+ ++TE +   +L  
Sbjct: 121 AQRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAKARDVSGLGIITEVMDASELDI 180

Query: 174 VAEYADIIQIGARNAQNFRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKII 233
           +AE AD+IQ+GARN QNF LL K G+  KPVLLKRG   TIE++L++AEY+  +GN  +I
Sbjct: 181 IAEVADVIQVGARNMQNFSLLKKVGAQPKPVLLKRGMAATIEDWLMAAEYVLAAGNPNVI 240

Query: 234 LCERGIRTFEKA-TRNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGA 292
           LCERGIRTF++  TRNTLD+S VP++RK +HLPI++DPSH  G  + V  ++ AAIA G 
Sbjct: 241 LCERGIRTFDRQYTRNTLDLSVVPVLRKLTHLPIMIDPSHGTGWAEYVPSMAMAAIAAGT 300

Query: 293 HGIIVEVHPEPEKALSDGKQSLDFELFKELVQEMKKLADALG 334
             +++EVHP P+KALSDG QSL  E F  L+QE+  +  A+G
Sbjct: 301 DSLMIEVHPNPKKALSDGPQSLTPEHFDRLMQELAVIGKAVG 342


Lambda     K      H
   0.318    0.138    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 298
Number of extensions: 8
Number of successful extensions: 4
Number of sequences better than 1.0e-02: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 352
Length adjustment: 29
Effective length of query: 309
Effective length of database: 323
Effective search space:    99807
Effective search space used:    99807
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)

Align candidate WP_011321312.1 AVA_RS23605 (3-deoxy-7-phosphoheptulonate synthase)
to HMM TIGR01361 (aroF: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54))

Software error:

../bin/blast/fastacmd -i /tmp/list.5645.in -d ../tmp/orgsDef_201/orgs.faa -p T > /tmp/gapView.5645.genome.faa failed: Inappropriate ioctl for device at ../lib/pbutils.pm line 379.

For help, please send mail to the webmaster (help@microbesonline.org), giving this error message and the time and date of the error.